Evidence map›Paper›PMID 23762515›Full record

ArticleEcology and evolution2013

Community composition of root-associated fungi in a Quercus-dominated temperate forest: "codominance" of mycorrhizal and root-endophytic fungi.

Hirokazu Toju, Satoshi Yamamoto, Hirotoshi Sato, Akifumi S Tanabe, Gregory S Gilbert, Kohmei Kadowaki

Abstract read
In one paragraph

Article in Ecology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

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0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  17. Review
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  19. Lifecycle ofMycoscience · 2021
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  20. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

6 authors.

Hirokazu TojuGraduate School of Global Environmental Studies, Kyoto University Sakyo, Kyoto, 606-8501, Japan ; Graduate School of Human and Environmental Studies, Kyoto University Sakyo, Kyoto, 606-8501, Japan.
Satoshi Yamamoto
Hirotoshi Sato
Akifumi S Tanabe
Gregory S Gilbert
Kohmei Kadowaki

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In terrestrial ecosystems, plant roots are colonized by various clades of mycorrhizal and endophytic fungi. Focused on the root systems of an oak-dominated temperate forest in Japan, we used 454 pyrosequencing to explore how phylogenetically diverse fungi constitute an ecological community of multiple ecotypes. In total, 345 operational taxonomic units (OTUs) of fungi were found from 159 terminal-root samples from 12 plant species occurring in the forest. Due to the dominance of an oak species (Quercus serrata), diverse ectomycorrhizal clades such as Russula, Lactarius, Cortinarius, Tomentella, Amanita, Boletus, and Cenococcum were observed. Unexpectedly, the root-associated fungal community was dominated by root-endophytic ascomycetes in Helotiales, Chaetothyriales, and Rhytismatales. Overall, 55.3% of root samples were colonized by both the commonly observed ascomycetes and ectomycorrhizal fungi; 75.0% of the root samples of the dominant Q. serrata were so cocolonized. Overall, this study revealed that root-associated fungal communities of oak-dominated temperate forests were dominated not only by ectomycorrhizal fungi but also by diverse root endophytes and that potential ecological interactions between the two ecotypes may be important to understand the complex assembly processes of belowground fungal communities.

Indexed as

454 next-generation sequencingdark septate endophytesfungal communitiesmetagenomicsmycorrhizaenetwork theory

Identifiers

PMID23762515
PMCPMC3678483

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.