Evidence map›Paper›PMID 23762491›Full record

ArticlePloS one2013

Zfp423 binds autoregulatory sites in p19 cell culture model.

Young-Wook Cho, Chen-Jei Hong, Aiju Hou, Peter M Gent, Kuixing Zhang, Kyoung-Jae Won, Bruce A Hamilton

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Development (Cambridge, England) · 2017
    Article
  6. Article
  7. Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Young-Wook ChoDepartments of Medicine and Cellular and Molecular Medicine, Institute for Genomic Medicine and Moores UCSD Cancer Center, University of California San Diego School of Medicine, La Jolla, California, United States of America.
Chen-Jei Hong
Aiju Hou
Peter M Gent
Kuixing Zhang
Kyoung-Jae Won
Bruce A Hamilton
University of California, San Diego · USUniversity of Pennsylvania · US

Funding

Genetic Analysis of Neural Stem CellsR01NS060109 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 2008 to 2012
$1.7M
Genetic Mechanisms in Cerebellum MalformationsR01NS054871 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 2007 to 2011
$1.6M
COGNITION, FATIGUE, AND MOOD IN MYASTHENIA GRAVISF32NS010909 · NINDS · MIRIAM HOSPITAL · PI PAUL, ROBERT H · 1999 to 2000
$39k
NINDS NIH HHS F32 NS010909NINDS NIH HHS NS010909NINDS NIH HHS NS054871NINDS NIH HHS R01 NS054871
6 · The paper itself

Abstract

Zfp423 is a 30 zinc finger transcription factor that forms regulatory complexes with EBF family members and factors targeted by canonical signaling pathways. Zfp423 mutations produce a range of developmental abnormalities in mice and humans related to the ciliopathies. Surprisingly, computational analysis of clustered Zfp423 and partner motifs in conserved genomic sequences predicts enrichment in Zfp423 and Ebf genes. In cell culture models selected for Zfp423 and EBF expression, we identify strong and reproducible occupancy of two Zfp423 intronic sites using chromatin immunoprecipitation with multiple independent antibodies. Both sites are significantly enriched in either quantitative PCR or massively parallel sequencing assays. A site in intron 5 acts as a classical enhancer in transient assays, but does not require the consensus motif for activity, suggesting a redundant or modulatory role for Zfp423 binding in this context. We speculate that Zfp423 may repress this enhancer as part of a developmental ratchet.

Indexed as

Gene Expression Regulation, DevelopmentalIntronsMutationAnimalsBinding SitesCell Line, TumorChromatin ImmunoprecipitationDNA-Binding ProteinsEnhancer Elements, GeneticGenes, ReporterHumansLuciferasesMiceModels, BiologicalMolecular Sequence DataProtein BindingDNA-Binding ProteinsEbfaz protein, mouseLuciferasesProtein IsoformsTranscription Factors

Identifiers

PMID23762491
PMCPMC3675209
OpenAlexW2018170841

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.