Evidence map›Paper›PMID 23762433›Full record

ArticlePloS one2013

Infra-red thermography for high throughput field phenotyping in Solanum tuberosum.

Ankush Prashar, Jane Yildiz, James W McNicol, Glenn J Bryan, Hamlyn G Jones

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Photosynthesis research under climate change.Photosynthesis research · 2021
    Review
  11. Article
  12. Article
  13. Review
  14. Elevated COPlants (Basel, Switzerland) · 2021
    Review
  15. Field Phenomics: Will It Enable Crop Improvement?Plant phenomics (Washington, D.C.) · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ankush PrasharCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, United Kingdom. Ankush.Prashar@hutton.ac.uk
Jane Yildiz
James W McNicol
Glenn J Bryan
Hamlyn G Jones

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rapid development of genomic technology has made high throughput genotyping widely accessible but the associated high throughput phenotyping is now the major limiting factor in genetic analysis of traits. This paper evaluates the use of thermal imaging for the high throughput field phenotyping of Solanum tuberosum for differences in stomatal behaviour. A large multi-replicated trial of a potato mapping population was used to investigate the consistency in genotypic rankings across different trials and across measurements made at different times of day and on different days. The results confirmed a high degree of consistency between the genotypic rankings based on relative canopy temperature on different occasions. Genotype discrimination was enhanced both through normalising data by expressing genotype temperatures as differences from image means and through the enhanced replication obtained by using overlapping images. A Monte Carlo simulation approach was used to confirm the magnitude of genotypic differences that it is possible to discriminate. The results showed a clear negative association between canopy temperature and final tuber yield for this population, when grown under ample moisture supply. We have therefore established infrared thermography as an easy, rapid and non-destructive screening method for evaluating large population trials for genetic analysis. We also envisage this approach as having great potential for evaluating plant response to stress under field conditions.

Indexed as

Infrared RaysAgricultureGenotypeImaging, Three-DimensionalPhenotypePlant LeavesQuantitative Trait, HeritableReference StandardsReproducibility of ResultsSolanum tuberosumTemperatureThermography

Identifiers

PMID23762433
PMCPMC3676367

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.