Evidence map›Paper›PMID 23760478›Full record

ArticleNature2013

53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark.

Amélie Fradet-Turcotte, Marella D Canny, Cristina Escribano-Díaz, Alexandre Orthwein, Charles C Y Leung, Hao Huang, Marie-Claude Landry, Julianne Kitevski-LeBlanc, Sylvie M Noordermeer, Frank Sicheri and 1 more

Expression of concernAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It carries an expression of concern. Cited by 443 papers.

0numbers the graph read from it
0cells of the map it votes in
443citing papers in PubMed
25.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

443 citing papers in PubMed, 676 citations in OpenAlex.

  1. Article
  2. Mechanisms and disease relevance of DNA break repair pathway choice.Nature reviews. Molecular cell biology · 2026
    Review
  3. Article
  4. Review
  5. RSF1-Dependent PAR Turnover Promotes 53BP1 Liquid Condensate Formation at DNA Damage Sites.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  6. Article
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  10. Article
  11. Article
  12. Review
  13. Article
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  15. Review
  16. Article
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  19. Article
  20. Article

383 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Amélie Fradet-TurcotteSamuel Lunenfeld Research Institute, Mount Sinai Hospital, 600 University Avenue, Toronto, Ontario M5G 1X5, Canada.
Marella D Canny
Cristina Escribano-Díaz
Alexandre Orthwein
Charles C Y Leung
Hao Huang
Marie-Claude Landry
Julianne Kitevski-LeBlanc
Sylvie M Noordermeer
Frank Sicheri
Daniel Durocher
Lunenfeld-Tanenbaum Research Institute · CAMount Sinai Hospital · CAUniversity of Toronto · CA

Funding

CIHR 84297-1CIHR 84297-2CIHR MOP84297
6 · The paper itself

Abstract

53BP1 (also called TP53BP1) is a chromatin-associated factor that promotes immunoglobulin class switching and DNA double-strand-break (DSB) repair by non-homologous end joining. To accomplish its function in DNA repair, 53BP1 accumulates at DSB sites downstream of the RNF168 ubiquitin ligase. How ubiquitin recruits 53BP1 to break sites remains unknown as its relocalization involves recognition of histone H4 Lys 20 (H4K20) methylation by its Tudor domain. Here we elucidate how vertebrate 53BP1 is recruited to the chromatin that flanks DSB sites. We show that 53BP1 recognizes mononucleosomes containing dimethylated H4K20 (H4K20me2) and H2A ubiquitinated on Lys 15 (H2AK15ub), the latter being a product of RNF168 action on chromatin. 53BP1 binds to nucleosomes minimally as a dimer using its previously characterized methyl-lysine-binding Tudor domain and a carboxy-terminal extension, termed the ubiquitination-dependent recruitment (UDR) motif, which interacts with the epitope formed by H2AK15ub and its surrounding residues on the H2A tail. 53BP1 is therefore a bivalent histone modification reader that recognizes a histone 'code' produced by DSB signalling.

Indexed as

DNA DamageUbiquitinationAmino Acid MotifsAmino Acid SequenceAnimalsCell Cycle ProteinsCell LineChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA Breaks, Double-StrandedFemaleHistonesHumansIntracellular Signaling Peptides and ProteinsLysineMaleCell Cycle ProteinsChromosomal Proteins, Non-HistoneCrb2 protein, S pombeDNA-Binding ProteinsHistonesIntracellular Signaling Peptides and ProteinsLysineMutant ProteinsNuclear ProteinsNucleosomesSchizosaccharomyces pombe ProteinsTrp53bp1 protein, mouseTumor Suppressor p53-Binding Protein 1Ubiquitin

Identifiers

PMID23760478
PMCPMC3955401
OpenAlexW1988259427

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.