Evidence map›Paper›PMID 23760279›Full record

ArticleThe Journal of biological chemistry2013

A conserved motif in Tetrahymena thermophila telomerase reverse transcriptase is proximal to the RNA template and is essential for boundary definition.

Benjamin M Akiyama, Anastassia Gomez, Michael D Stone

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 13 citations in OpenAlex.

  1. Telomerase structural biology comes of age.Current opinion in structural biology · 2022
    Review
  2. Article
  3. Article
  4. A structurally conserved human andProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Benjamin M AkiyamaDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064, USA.
Anastassia Gomez
Michael D Stone
University of California, Santa Cruz · US

Funding

UNIV OF CAL, SANTA CRUZ, MARC HONORS UNDERGRADUATE PROT34GM007910 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI ZAHLER, ALAN M · 1985 to 2020
$7.6M
Structure and dynamics of the Tetrahymena telomerase ribonucleoproteinR01GM095850 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STONE, MICHAEL D · 2011 to 2023
$4.4M
Training Program/Molecular/Cell/Developmental BiologyT32GM008646 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STROME, SUSAN · 1999 to 2018
$3.7M
NIGMS NIH HHS GM095850NIGMS NIH HHS R01 GM095850NIGMS NIH HHS T32 GM008646NIGMS NIH HHS T32 GM8646NIGMS NIH HHS T34 GM007910NIGMS NIH HHS T34 GM007910-31
6 · The paper itself

Abstract

The ends of linear chromosomes are extended by telomerase, a ribonucleoprotein complex minimally consisting of a protein subunit called telomerase reverse transcriptase (TERT) and the telomerase RNA (TER). TERT functions by reverse transcribing a short template region of TER into telomeric DNA. Proper assembly of TERT and TER is essential for telomerase activity; however, a detailed understanding of how TERT interacts with TER is lacking. Previous studies have identified an RNA binding domain (RBD) within TERT, which includes three evolutionarily conserved sequence motifs: CP2, CP, and T. Here, we used site-directed hydroxyl radical probing to directly identify sites of interaction between the TERT RBD and TER, revealing that the CP2 motif is in close proximity to a conserved region of TER known as the template boundary element (TBE). Gel shift assays on CP2 mutants confirmed that the CP2 motif is an RNA binding determinant. Our results explain previous work that established that mutations to the CP2 motif of TERT and to the TBE of TER both permit misincorporation of nucleotides into the growing DNA strand beyond the canonical template. Taken together, these results suggest a model in which the CP2 motif binds the TBE to strictly define which TER nucleotides can be reverse transcribed.

Indexed as

Amino Acid MotifsBase SequenceBinding SitesElectrophoresis, Polyacrylamide GelElectrophoretic Mobility Shift AssayModels, MolecularMolecular Sequence DataMutationNucleic Acid ConformationNucleotide MotifsProtein BindingProtein Structure, TertiaryProtozoan ProteinsRNARNA, ProtozoanTelomeraseProtozoan ProteinsRNARNA, ProtozoanTelomerasetelomerase RNARibonuclear Protein (RNP)RNARNA-binding ProteinTelomeraseTelomeres

Identifiers

PMID23760279
PMCPMC3724666
OpenAlexW2028874480

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.