Evidence map›Paper›PMID 23760278›Full record

ArticleThe Journal of biological chemistry2013

A link between dimerization and autophosphorylation of the response regulator PhoB.

Rachel L Creager-Allen, Ruth E Silversmith, Robert B Bourret

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 44 citations in OpenAlex.

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  11. Control of theEcoSal Plus · 2019
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  14. The Global Acetylome of the Human PathogenFrontiers in cellular and infection microbiology · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Rachel L Creager-AllenDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599-7290, USA.
Ruth E Silversmith
Robert B Bourret
University of North Carolina at Chapel Hill · USInstitute of Molecular Biology and Biophysics · RU

Funding

Molecular Mechanisms of Signal Transduction by Two-Component Regulatory SystemsR01GM050860 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOURRET, ROBERT B. · 1994 to 2025
$7.9M
NIGMS NIH HHS R01 GM050860NIGMS NIH HHS R01GM050860
6 · The paper itself

Abstract

Response regulator proteins within two-component signal transduction systems are activated by phosphorylation and can catalyze their own covalent phosphorylation using small molecule phosphodonors. To date, comprehensive kinetic characterization of response regulator autophosphorylation is limited to CheY, which follows a simple model of phosphodonor binding followed by phosphorylation. We characterized autophosphorylation of the response regulator PhoB, known to dimerize upon phosphorylation. In contrast to CheY, PhoB time traces exhibited an initial lag phase and gave apparent pseudo-first order rate constants that increased with protein concentration. Furthermore, plots of the apparent autophosphorylation rate constant versus phosphodonor concentration were sigmoidal, as were PhoB binding isotherms for the phosphoryl group analog BeF3(-). Successful mathematical modeling of the kinetic data necessitated inclusion of the formation of a PhoB heterodimer (one phosphorylated and one unphosphorylated monomer) with an enhanced rate of phosphorylation. Specifically, dimerization constants for the PhoB heterodimer and homodimer (two phosphorylated monomers) were similar, but the rate constant for heterodimer phosphorylation was ~10-fold higher than for the monomer. In a test of the model, disruption of the known PhoB(N) dimerization interface by mutation led to markedly slower and noncooperative autophosphorylation kinetics. Furthermore, phosphotransfer from the sensor kinase PhoR was enhanced by dimer formation. Phosphorylation-mediated dimerization allows many response regulators to bind to tandem DNA-binding sites and regulate transcription. Our data challenge the notion that response regulator dimers primarily form between two phosphorylated monomers and raise the possibility that response regulator heterodimers containing one phosphoryl group may participate in gene regulation.

Indexed as

Protein MultimerizationAlgorithmsBacterial ProteinsBerylliumDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsFluoridesKineticsMembrane ProteinsMethyl-Accepting Chemotaxis ProteinsModels, BiologicalModels, ChemicalModels, MolecularMutagenesis, Site-DirectedMutationBacterial ProteinsBerylliumberyllium trifluoridecheY protein, E coliDNA-Binding ProteinsEscherichia coli ProteinsFluoridesMembrane ProteinsMethyl-Accepting Chemotaxis ProteinsPhoB protein, BacteriaBacterial Signal TransductionCooperativityDimerizationEnzyme KineticsPhoBPhosphoramidateProtein PhosphorylationProtein-Protein InteractionsResponse RegulatorTwo-component System

Identifiers

PMID23760278
PMCPMC3724633
OpenAlexW1967117494

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.