Evidence map›Paper›PMID 23760240›Full record

ArticleJournal of virology2013

Capsid antibodies to different adeno-associated virus serotypes bind common regions.

Brittney L Gurda, Michael A DiMattia, Edward B Miller, Antonette Bennett, Robert McKenna, Wendy S Weichert, Christian D Nelson, Wei-jun Chen, Nicholas Muzyczka, Norman H Olson and 8 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 118 citations in OpenAlex.

  1. The immunogenicity and safety of adenoviral-based vaccines.Current opinion in allergy and clinical immunology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. The amazing AAV capsids: Into the structure-verse.Molecular therapy. Methods & clinical development · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Structures and functions of the limited natural polyclonal antibody response to parvovirus infection.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Review
  11. Article
  12. Article
  13. Rationally engineered novel AAV capsids for intra-articular gene delivery.Molecular therapy. Methods & clinical development · 2024
    Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 1 country.

Brittney L GurdaDeptartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, Florida, USA.
Michael A DiMattia
Edward B Miller
Antonette Bennett
Robert McKenna
Wendy S Weichert
Christian D Nelson
Wei-jun Chen
Nicholas Muzyczka
Norman H Olson
Robert S Sinkovits
John A Chiorini
Sergei Zolotutkhin
Olga G Kozyreva
R Jude Samulski
Timothy S Baker
Colin R Parrish
Mavis Agbandje-McKenna
University of Florida · USCornell University · USUniversity of California, San Diego · USUniversity of North Carolina at Chapel Hill · USNational Institutes of Health · US

Funding

Adeno-associated Virus Biology And Utilization For Gene TransferZIADE000695 · NIDCR · NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH · PI CHIORINI, JAY · 2009 to 2025
$36.6M
VECTOR AND MOLECULAR BIOLOGY COREP01HL112761 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MONAHAN, PAUL E · 2013 to 2017
$11.3M
Structural studies of AAV capsids and their glycan receptor interactionsR01GM082946 · NIGMS · UNIVERSITY OF FLORIDA · PI ROBERT MCKENNA · 2007 to 2026
$6.1M
Microscopy &Image Analysis of Unstained MacromoleculesR37GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2013
$5.6M
Rational and Combinatorial Engineering of AAV VectorsR01AI072176 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HIRSCH, MATTHEW LOUIS, SAMULSKI, RICHARD J · 2008 to 2017
$3.7M
TRANSMISSION ELECTRON MICROSCOPE: STRUCTURAL &CELL BIOL: MEMBRANE TRANSPORT, GAS10RR020016 · NCRR · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2004
$2.0M
Antigenic structure of adeno-associated virus capsids and antibody escape mutantsR21AI072341 · NIAID · CORNELL UNIVERSITY · PI PARRISH, COLIN R. · 2007 to 2008
$417k
Intramural NIH HHSNCRR NIH HHS 1S10 RR020016NCRR NIH HHS S10 RR020016NHLBI NIH HHS P01 HL112761NIAID NIH HHS R01 AI072176NIAID NIH HHS R01 AI072176-01NIAID NIH HHS R21 AI072341NIAID NIH HHS R21AI072341NIGMS NIH HHS R01 GM082946NIGMS NIH HHS R37 GM033050NIGMS NIH HHS R37 GM-33050
6 · The paper itself

Abstract

Interactions between viruses and the host antibody immune response are critical in the development and control of disease, and antibodies are also known to interfere with the efficacy of viral vector-based gene delivery. The adeno-associated viruses (AAVs) being developed as vectors for corrective human gene delivery have shown promise in clinical trials, but preexisting antibodies are detrimental to successful outcomes. However, the antigenic epitopes on AAV capsids remain poorly characterized. Cryo-electron microscopy and three-dimensional image reconstruction were used to define the locations of epitopes to which monoclonal fragment antibodies (Fabs) against AAV1, AAV2, AAV5, and AAV6 bind. Pseudoatomic modeling showed that, in each serotype, Fabs bound to a limited number of sites near the protrusions surrounding the 3-fold axes of the T=1 icosahedral capsids. For the closely related AAV1 and AAV6, a common Fab exhibited substoichiometric binding, with one Fab bound, on average, between two of the three protrusions as a consequence of steric crowding. The other AAV Fabs saturated the capsid and bound to the walls of all 60 protrusions, with the footprint for the AAV5 antibody extending toward the 5-fold axis. The angle of incidence for each bound Fab on the AAVs varied and resulted in significant differences in how much of each viral capsid surface was occluded beyond the Fab footprints. The AAV-antibody interactions showed a common set of footprints that overlapped some known receptor-binding sites and transduction determinants, thus suggesting potential mechanisms for virus neutralization by the antibodies.

Indexed as

Antibodies, MonoclonalAntibodies, ViralBinding SitesCapsidCryoelectron MicroscopyDependovirusEpitopesHumansImaging, Three-DimensionalMacromolecular SubstancesModels, MolecularProtein BindingAntibodies, MonoclonalAntibodies, ViralEpitopesMacromolecular Substances

Identifiers

PMID23760240
PMCPMC3754064
OpenAlexW2171084404

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.