Evidence map›Paper›PMID 23758733›Full record

ArticleBMC genomics2013

Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells.

Sheila Z Kimaro Mlacha, Sandra Romero-Steiner, Julie C Dunning Hotopp, Nikhil Kumar, Nadeeza Ishmael, David R Riley, Umar Farooq, Todd H Creasy, Luke J Tallon, Xinyue Liu and 6 more

Abstract read
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Microbiology spectrum · 2026
    Article
  2. Streamlining marker-less allelic replacement inApplied and environmental microbiology · 2024
    Article
  3. Article
  4. Secondary infection withFEMS microbes · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Sheila Z Kimaro MlachaKenya Medical Research Institute, Wellcome Trust Research Programme, Kilifi, Kenya.
Sandra Romero-Steiner
Julie C Dunning Hotopp
Nikhil Kumar
Nadeeza Ishmael
David R Riley
Umar Farooq
Todd H Creasy
Luke J Tallon
Xinyue Liu
Cynthia S Goldsmith
Jacquelyn Sampson
George M Carlone
Susan K Hollingshead
J Anthony G Scott
Hervé Tettelin

Funding

Wellcome Trust 081835Wellcome Trust 084538Wellcome Trust 092654Wellcome Trust 098532
6 · The paper itself

Abstract

backgroundStreptococcus pneumoniae is a leading cause of childhood morbidity and mortality worldwide, despite the availability of effective pneumococcal vaccines. Understanding the molecular interactions between the bacterium and the host will contribute to the control and prevention of pneumococcal disease.

resultsWe used a combination of adherence assays, mutagenesis and functional genomics to identify novel factors involved in adherence. By contrasting these processes in two pneumococcal strains, TIGR4 and G54, we showed that adherence and invasion capacities vary markedly by strain. Electron microscopy showed more adherent bacteria in association with membranous pseudopodia in the TIGR4 strain. Operons for cell wall phosphorylcholine incorporation (lic), manganese transport (psa) and phosphate utilization (phn) were up-regulated in both strains on exposure to epithelial cells. Pneumolysin, pili, stress protection genes (adhC-czcD) and genes of the type II fatty acid synthesis pathway were highly expressed in the naturally more invasive strain, TIGR4. Deletion mutagenesis of five gene regions identified as regulated in this study revealed attenuation in adherence. Most strikingly, ∆SP_1922 which was predicted to contain a B-cell epitope and revealed significant attenuation in adherence, appeared to be expressed as a part of an operon that includes the gene encoding the cytoplasmic pore-forming toxin and vaccine candidate, pneumolysin.

conclusionThis work identifies a list of novel potential pneumococcal adherence determinants.

Indexed as

Gene Expression ProfilingGenomicsPhenotypeBacterial AdhesionCell Line, TumorGene Knockout TechniquesGenes, BacterialHumansMutagenesisOligonucleotide Array Sequence AnalysisPharynxSequence DeletionSpecies SpecificityStreptococcus pneumoniaeTranscription, Genetic

Identifiers

PMID23758733
PMCPMC3708772

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.