Evidence map›Paper›PMID 23758475›Full record

ArticleOmics : a journal of integrative biology2013

Gene panel model predictive of outcome in patients with prostate cancer.

Nadège Rabiau, Yann Dantal, Laurent Guy, Marjolaine Ngollo, Aslihan Dagdemir, Jean-Louis Kemeny, Benoît Terris, Annick Vieillefond, Jean-Paul Boiteux, Yves-Jean Bignon and 1 more

Open access · greenAbstract read
In one paragraph

Article in Omics : a journal of integrative biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Nadège RabiauDepartment of Oncogenetics, Centre Jean Perrin, Clermont-Ferrand, France.
Yann Dantal
Laurent Guy
Marjolaine Ngollo
Aslihan Dagdemir
Jean-Louis Kemeny
Benoît Terris
Annick Vieillefond
Jean-Paul Boiteux
Yves-Jean Bignon
Dominique Bernard-Gallon
Université Clermont Auvergne · FRCentre Hospitalier Gabriel-Martin · FRCentre Jean Perrin · FRHôpital Cochin · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In men at high risk for prostate cancer, established clinical and pathological parameters provide only limited prognostic information. Here we analyzed a French cohort of 103 prostate cancer patients and developed a gene panel model predictive of outcome in this group of patients. The model comprised of a 15-gene TaqMan Low-Density Array (TLDA) card, with gene expressions compared to a standardized reference. The RQ value for each gene was calculated, and a scoring system was developed. Summing all the binary scores (0 or 1) corresponding to the 15 genes, a global score is obtained between 0 and 15. This global score can be compared to Gleason score (0 to 10) by recalculating it into a 0-10 scaled score. A scaled score ≥2 suggested that the patient is suffering from a prostate cancer, and a scaled score ≥7 flagged aggressive cancer. Statistical analyses demonstrated a strongly significant linear correlation (p=3.50E-08) between scaled score and Gleason score for this prostate cancer cohort (N=103). These results support the capacity of this designed 15 target gene TLDA card approach to predict outcome in prostate cancer, opening up a new avenue for personalized medicine through future independent replication and applications for rapid identification of aggressive prostate cancer phenotypes for early intervention.

Indexed as

Gene Expression ProfilingAgedAged, 80 and overBiopsyGene Expression Regulation, NeoplasticGenomicsHumansMaleMiddle AgedNeoplasm GradingPrognosisProstateProstatic Neoplasms

Identifiers

PMID23758475
PMCPMC3727569
OpenAlexW2021134987

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.