Evidence map›Paper›PMID 23758046›Full record

ArticleACS nano2013

Threading immobilized DNA molecules through a solid-state nanopore at >100 μs per base rate.

Changbae Hyun, Harpreet Kaur, Ryan Rollings, Min Xiao, Jiali Li

Abstract read
In one paragraph

Article in ACS nano, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Solid-State Nanopores for Biomolecular Analysis and Detection.Advances in biochemical engineering/biotechnology · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Nanopore-based fourth-generation DNA sequencing technology.Genomics, proteomics & bioinformatics · 2015
    Review
  16. Article
  17. Article
  18. The evolution of nanopore sequencing.Frontiers in genetics · 2014
    Review
  19. A nanopore-nanofiber mesh biosensor to control DNA translocation.Journal of the American Chemical Society · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Changbae HyunDepartment of Physics, University of Arkansas, Fayetteville, Arkansas 72701, USA.
Harpreet Kaur
Ryan Rollings
Min Xiao
Jiali Li

Funding

Exploration of Solid-state Nanopore Reading Labeled Linear DNA SequenceR21HG004776 · NHGRI · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI LI, JIALI · 2008 to 2012
$1.0M
NHGRI NIH HHS R21 HG004776NHGRI NIH HHS R21HG004776
6 · The paper itself

Abstract

In pursuit of developing solid-state nanopore-based DNA sequencing technology, we have designed and constructed an apparatus that can place a DNA-tethered probe tip near a solid-state nanopore, control the DNA moving speed, and measure the ionic current change when a DNA molecule is captured and released from a nanopore. The probe tip's position is sensed and controlled by a tuning fork based feedback force sensor and a nanopositioning system. Using this newly constructed apparatus, a DNA strand moving rate of >100 μs/base or <1 nm/ms in silicon nitride nanopores has been accomplished. This rate is 10 times slower than by manipulating DNA-tethered beads using optical tweezers and 1000 times slower than free DNA translocation through solid-state nanopores reported previously, which provides enough temporal resolution to read each base on a tethered DNA molecule using available single-channel recording electronics on the market today. This apparatus can measure three signals simultaneously: ionic current through a nanopore, tip position, and tip vibrational amplitude during the process of a DNA molecule's capture and release by a nanopore. We show results of this apparatus for measuring λ DNA's capture and release distances and for current blockage signals of λ DNA molecules biotinylated with one end and with both ends tethered to a tip.

Indexed as

ConductometryDNA, ViralEquipment DesignEquipment Failure AnalysisManometryMicro-Electrical-Mechanical SystemsMicromanipulationParticle SizeDNA, Viral

Identifiers

PMID23758046
PMCPMC3782089

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.