Evidence map›Paper›PMID 23757188›Full record

ArticleNucleic acids research2013

DNA topoisomerase IIα controls replication origin cluster licensing and firing time in Xenopus egg extracts.

Vincent Gaggioli, Barbara Le Viet, Thomas Germe, Olivier Hyrien

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Vincent GaggioliInstitut de Biologie de l'Ecole Normale Supérieure (IBENS), S2-Génomique Fonctionnelle, CNRS UMR8197, Inserm U1024, 46 rue d'Ulm, 75005 Paris, France.
Barbara Le Viet
Thomas Germe
Olivier Hyrien
Inserm · FRCentre National de la Recherche Scientifique · FRInstitut de Biologie de l'École Normale Supérieure · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sperm chromatin incubated in Xenopus egg extracts undergoes origin licensing and nuclear assembly before DNA replication. We found that depletion of DNA topoisomerase IIα (topo IIα), the sole topo II isozyme of eggs and its inhibition by ICRF-193, which clamps topo IIα around DNA have opposite effects on these processes. ICRF-193 slowed down replication origin cluster activation and fork progression in a checkpoint-independent manner, without altering replicon size. In contrast, topo IIα depletion accelerated origin cluster activation, and topo IIα add-back negated overinitiation. Therefore, topo IIα is not required for DNA replication, but topo IIα clamps slow replication, probably by forming roadblocks. ICRF-193 had no effect on DNA synthesis when added after nuclear assembly, confirming that topo IIα activity is dispensable for replication and revealing that topo IIα clamps formed on replicating DNA do not block replication, presumably because topo IIα acts behind and not in front of forks. Topo IIα depletion increased, and topo IIα addition reduced, chromatin loading of MCM2-7 replicative helicase, whereas ICRF-193 did not affect MCM2-7 loading. Therefore, topo IIα restrains MCM2-7 loading in an ICRF-193-resistant manner during origin licensing, suggesting a model for establishing the sequential firing of origin clusters.

Indexed as

Replication OriginAdenosine TriphosphatasesAnimalsAntigens, NeoplasmBase SequenceCarrier ProteinsCell Cycle CheckpointsCell NucleusDiketopiperazinesDNA-Binding ProteinsDNA ReplicationDNA Topoisomerases, Type IIMaleMinichromosome Maintenance Complex Component 2Minichromosome Maintenance Complex Component 7Ovum4,4'-(1,2-dimethyl-1,2-ethanediyl)bis-2,6-piperazinedioneAdenosine TriphosphatasesAntigens, NeoplasmCarrier ProteinsDiketopiperazinesDNA-Binding ProteinsDNA Topoisomerases, Type IIMcm2 protein, XenopusMcm7 protein, XenopusMinichromosome Maintenance Complex Component 2Minichromosome Maintenance Complex Component 7PiperazinesXenopus Proteins

Identifiers

PMID23757188
PMCPMC3753627
OpenAlexW2039070262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.