ArticlePlant molecular biology2013
Genome-wide expression profiles of seasonal bud dormancy at four critical stages in Japanese apricot.
Article in Plant molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed, 68 citations in OpenAlex.
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- Metabolomic Analysis Provides Insights into Bud Paradormancy inInternational journal of molecular sciences · 2025Article
- Regulatory Mechanisms of Bud Dormancy: Environmental, Hormonal, and Genetic Perspectives.International journal of molecular sciences · 2025Review
- Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology.BMC plant biology · 2023Article
- Small RNA and Degradome Sequencing in Floral Bud Reveal Roles of miRNAs in Dormancy Release ofInternational journal of molecular sciences · 2023Article
- Identification of Key Genes Related to Dormancy Control inPlants (Basel, Switzerland) · 2022Article
- Unravelling the Role of Epigenetic Modifications in Development and Reproduction of Angiosperms: A Critical Appraisal.Frontiers in genetics · 2022Review
- Growing in time: exploring the molecular mechanisms of tree growth.Tree physiology · 2021Review
- miR169 and PmRGL2 synergistically regulate the NF-Y complex to activate dormancy release in Japanese apricot (Prunus mume Sieb. et Zucc.).Plant molecular biology · 2021Article
- Comparative study of3 Biotech · 2020Article
- Comparative transcriptomics of stem bark reveals genes associated with bast fiber development in Boehmeria nivea L. gaud (ramie).BMC genomics · 2020Article
- From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy.BMC genomics · 2019Article
- How fall dormancy benefits alfalfa winter-survival? Physiologic and transcriptomic analyses of dormancy process.BMC plant biology · 2019Article
- Production, pomological and nutraceutical properties of apricot.Journal of food science and technology · 2019Review
- Overexpression of Prunus DAM6 inhibits growth, represses bud break competency of dormant buds and delays bud outgrowth in apple plants.PloS one · 2019Article
- Hormonal Orchestration of Bud Dormancy Cycle in Deciduous Woody Perennials.Frontiers in plant science · 2019Review
- Transcriptome Profiles Reveal the Crucial Roles of Hormone and Sugar in the Bud Dormancy of Prunus mume.Scientific reports · 2018Article
- Bud Dormancy in Perennial Fruit Tree Species: A Pivotal Role for Oxidative Cues.Frontiers in plant science · 2018Review
- I Want to (Bud) Break Free: The Potential Role ofFrontiers in plant science · 2018Review
- Kiwifruit SVP2 gene prevents premature budbreak during dormancy.Journal of experimental botany · 2017Article
Corrections and comments
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Dormancy is one of the most important adaptive mechanisms developed by perennial plants. To reveal the comprehensive mechanism of seasonal bud dormancy at four critical stages in Japanese apricot (Prunus persica), we applied Illumina sequencing to study differentially expressed genes (DEGs) at the transcriptional level. As a result, 19,759, 16,375, 19,749 and 20,800 tag-mapped genes were sequenced from libraries of paradormancy (R1), endodormancy (R2), ecodormancy (R3) and dormancy release (R4) stages based on the P. persica genome. Moreover, 6,199, 5,539, and 5,317 genes were differentially expressed in R1 versus R2, R2 versus R3, and R3 versus R4, respectively. Gene Ontology analysis of dormancy-related genes showed that these were mainly related to the cytoplasm, cytoplasmic part metabolism, intracellular metabolism and membrane-bound organelle metabolism. Pathway-enrichment annotation revealed that highly ranked genes were involved in ribosome pathways and protein processing in the endoplasmic reticulum. The results demonstrated that hormone response genes such as auxin, abscisic acid, ethylene and jasmonic acid, as well as zinc finger family protein genes are possibly involved in seasonal bud dormancy in Japanese apricot. The expression patterns of DEGs were verified using real-time quantitative RT-PCR. These results contribute to further understanding of the mechanism of bud dormancy in Japanese apricot.
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