Evidence map›Paper›PMID 23755964›Full record

ArticleDNA repair2013

Human NEIL3 is mainly a monofunctional DNA glycosylase removing spiroimindiohydantoin and guanidinohydantoin.

Silje Z Krokeide, Jon K Laerdahl, Medya Salah, Luisa Luna, F Henning Cederkvist, Aaron M Fleming, Cynthia J Burrows, Bjørn Dalhus, Magnar Bjørås

Open access · hybridAbstract read
In one paragraph

Article in DNA repair, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 98 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
  5. Research progress on the role of the NEIL family in cancer.Frontiers in cell and developmental biology · 2025
    Review
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  7. Review
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Silje Z KrokeideDepartment of Microbiology, University of Oslo, Oslo University Hospital, Rikshospitalet, PO Box 4950, Nydalen, NO-0424 Oslo, Norway.
Jon K Laerdahl
Medya Salah
Luisa Luna
F Henning Cederkvist
Aaron M Fleming
Cynthia J Burrows
Bjørn Dalhus
Magnar Bjørås
Oslo University Hospital · NOUniversity of Oslo · NOUniversity of Utah · US

Funding

Chemistry and Biology of Oxidized Purine Lesions in DNAR01CA090689 · NCI · UNIVERSITY OF UTAH · PI BURROWS, CYNTHIA J, DAVID, SHEILA SUE · 2002 to 2019
$5.5M
NCI NIH HHS R01 CA090689
6 · The paper itself

Abstract

Base excision repair is the major pathway for removal of oxidative DNA base damage. This pathway is initiated by DNA glycosylases, which recognize and excise damaged bases from DNA. In this work, we have purified the glycosylase domain (GD) of human DNA glycosylase NEIL3. The substrate specificity has been characterized and we have elucidated the catalytic mechanisms. GD NEIL3 excised the hydantoin lesions spiroiminodihydantoin (Sp) and guanidinohydantoin (Gh) in single-stranded (ss) and double-stranded (ds) DNA efficiently. NEIL3 also removed 5-hydroxy-2'-deoxycytidine (5OHC) and 5-hydroxy-2'-deoxyuridine (5OHU) in ssDNA, but less efficiently than hydantoins. Unlike NEIL1 and NEIL2, which possess a β,δ-elimination activity, NEIL3 mainly incised damaged DNA by β-elimination. Further, the base excision and strand incision activities of NEIL3 exhibited a non-concerted action, indicating that NEIL3 mainly operate as a monofunctional DNA glycosylase. The site-specific NEIL3 mutant V2P, however, showed a concerted action, suggesting that the N-terminal amino group in Val2 is critical for the monofunctional modus. Finally, we demonstrated that residue Lys81 is essential for catalysis.

Indexed as

Catalytic DomainDNADNA Breaks, Double-StrandedDNA Breaks, Single-StrandedDNA GlycosylasesDNA RepairGuanidinesGuanosineHumansHydantoinsLysineMutationN-Glycosyl HydrolasesRecombinant ProteinsSpiro CompoundsSubstrate SpecificityDNADNA GlycosylasesGuanidinesguanidinohydantoinGuanosineHydantoinsLysineNEIL3 protein, humanN-Glycosyl HydrolasesRecombinant ProteinsSpiro Compoundsspiroiminodihydantoin2,6-diamino-4-hydroxy-5-formamidopyrimidine5-hydroxy-2′-deoxycytidine5-hydroxy-2′-deoxyuridine5OHC5OHUAPapurinic/apyrimidinicbase excision repairBase excision repairBERcolumn volumecore glycosylase domainCVDNA damageDNA glycosylasedouble-strandeddsE. coli endonuclease VIIIE. coli endonuclease VIII-likeendonuclease IIIEscherichia coli formamidopyrimidine DNA glycosylasefaPyFpgGDGhguanidinohydantoinH2THhelix-two-turn-helixHuman NEIL3MCSMouse Neil3multiple cloning siteNeiNEILNthOxidationreactive oxygen speciesROSsingle-strandedSpspiroiminodihydantoinssUDGuracil DNA glycosylase

Identifiers

PMID23755964
PMCPMC3840045
OpenAlexW1989400378

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.