Evidence map›Paper›PMID 23755230›Full record

ArticlePloS one2013

Complete genome sequence analysis of Nocardia brasiliensis HUJEG-1 reveals a saprobic lifestyle and the genes needed for human pathogenesis.

Lucio Vera-Cabrera, Rocio Ortiz-Lopez, Ramiro Elizondo-Gonzalez, Jorge Ocampo-Candiani

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  3. Molecular mechanisms underlyingFrontiers in cellular and infection microbiology · 2026
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  6. Updated Review onClinical microbiology reviews · 2022
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  8. Comparative genomics ofMicrobial genomics · 2022
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  9. A Complete Genome ofInfection and drug resistance · 2022
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  13. Article
  14. Screening and Identification of B-Cell Epitopes in the P61 Protein ofFrontiers in cellular and infection microbiology · 2018
    Article
  15. Non-Coding RNAs are Differentially Expressed byThe open microbiology journal · 2017
    Article
  16. Frontiers in cellular and infection microbiology · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Lucio Vera-CabreraLaboratorio Interdisciplinario de Investigación Dermatológica, Servicio de Dermatología, Hospital Universitario, UANL, Monterrey, NL, México. drluciovera@yahoo.com
Rocio Ortiz-Lopez
Ramiro Elizondo-Gonzalez
Jorge Ocampo-Candiani
Hospital Universitario Dr José Eleuterio Gonzalez · MXUniversidad Autónoma de Nuevo León · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nocardia brasiliensis is an important etiologic agent of mycetoma. These bacteria live as a saprobe in soil or organic material and enter the tissue via minor trauma. Mycetoma is characterized by tumefaction and the production of fistula and abscesses, with no spontaneous cure. By using mass sequencing, we determined the complete genomic nucleotide sequence of the bacteria. According to our data, the genome is a circular chromosome 9,436,348-bp long with 68% G+C content that encodes 8,414 proteins. We observed orthologs for virulence factors, a higher number of genes involved in lipid biosynthesis and catabolism, and gene clusters for the synthesis of bioactive compounds, such as antibiotics, terpenes, and polyketides. An in silico analysis of the sequence supports the conclusion that the bacteria acquired diverse genes by horizontal transfer from other soil bacteria, even from eukaryotic organisms. The genome composition reflects the evolution of bacteria via the acquisition of a large amount of DNA, which allows it to survive in new ecological niches, including humans.

Indexed as

Gene Expression Regulation, BacterialGenome, BacterialSoil MicrobiologyAnti-Bacterial AgentsBacterial ProteinsChromosome MappingChromosomes, BacterialDNA Transposable ElementsDrug Resistance, Multiple, BacterialGene Transfer, HorizontalHumansMetabolic Networks and PathwaysMolecular Sequence AnnotationMycetomaNocardiaNocardia InfectionsAnti-Bacterial AgentsBacterial ProteinsDNA Transposable ElementsVirulence Factors

Identifiers

PMID23755230
PMCPMC3670865
OpenAlexW2056802625

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.