Evidence map›Paper›PMID 23755101›Full record

ArticlePloS one2014

In TCR-stimulated T-cells, N-ras regulates specific genes and signal transduction pathways.

Stephen J Lynch, Jiri Zavadil, Angel Pellicer

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  5. Review
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Stephen J LynchDepartment of Pathology, New York University Langone School of Medicine, New York, New York, United States of America.
Jiri Zavadil
Angel Pellicer
NYU Langone Health · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
RAS GENE MUTATION TIME AND STRUCTURE IN MOUSE LYMPHOMASR01CA036327 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PELLICER, ANGEL · 1985 to 2008
$3.9M
MOLECULAR PATHOLOGY &FUNCTION OF RAS ONCOGENESR37CA036327 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PELLICER, ANGEL · 1992 to 1998
–
NCI NIH HHS 5 P30CA16087-33NCI NIH HHS CA36327NCI NIH HHS P30 CA016087NCI NIH HHS P30 CA016087-30NCI NIH HHS R01 CA036327
6 · The paper itself

Abstract

It has been recently shown that N-ras plays a preferential role in immune cell development and function; specifically: N-ras, but not H-ras or K-ras, could be activated at and signal from the Golgi membrane of immune cells following a low level T-cell receptor stimulus. The goal of our studies was to test the hypothesis that N-ras and H-ras played distinct roles in immune cells at the level of the transcriptome. First, we showed via mRNA expression profiling that there were over four hundred genes that were uniquely differentially regulated either by N-ras or H-ras, which provided strong evidence in favor of the hypothesis that N-ras and H-ras have distinct functions in immune cells. We next characterized the genes that were differentially regulated by N-ras in T cells following a low-level T-cell receptor stimulus. Of the large pool of candidate genes that were differentially regulated by N-ras downstream of TCR ligation, four genes were verified in qRT-PCR-based validation experiments (Dntt, Slc9a6, Chst1, and Lars2). Finally, although there was little overlap between individual genes that were regulated by N-ras in unstimulated thymocytes and stimulated CD4(+) T-cells, there was a nearly complete correspondence between the signaling pathways that were regulated by N-ras in these two immune cell types.

Indexed as

Gene Expression RegulationAnimalsCD4-Positive T-LymphocytesDatabases, GeneticGene Expression ProfilingGenetic Association StudiesLymphocyte ActivationMice, KnockoutOligonucleotide Array Sequence Analysisras ProteinsReceptors, Antigen, T-CellReproducibility of ResultsSignal TransductionSpleenThymocytesTranscriptomeras ProteinsReceptors, Antigen, T-Cell

Identifiers

PMID23755101
PMCPMC3670928
OpenAlexW2042460081

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.