Evidence map›Paper›PMID 23754950›Full record

ArticlePLoS genetics2013

Global DNA hypermethylation in down syndrome placenta.

Shengnan Jin, Yew Kok Lee, Yen Ching Lim, Zejun Zheng, Xueqin Michelle Lin, Desmond P Y Ng, Joanna D Holbrook, Hai Yang Law, Kenneth Y C Kwek, George S H Yeo and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 112 citations in OpenAlex.

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  6. Delayed atorvastatin delivery promotes recovery after experimental spinal cord injury.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2025
    Article
  7. Placental biomarkers for the prediction of neurodevelopmental disorders.Frontiers in cell and developmental biology · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Shengnan JinGrowth, Development and Metabolism Program, Singapore Institute for Clinical Sciences, Agency for Science, Technology and Research, Singapore.
Yew Kok Lee
Yen Ching Lim
Zejun Zheng
Xueqin Michelle Lin
Desmond P Y Ng
Joanna D Holbrook
Hai Yang Law
Kenneth Y C Kwek
George S H Yeo
Chunming Ding
Agency for Science, Technology and Research · SGSingapore Institute for Clinical Sciences · SGKK Women's and Children's Hospital · SGBoston Children's Hospital · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Down syndrome (DS), commonly caused by an extra copy of chromosome 21 (chr21), occurs in approximately one out of 700 live births. Precisely how an extra chr21 causes over 80 clinically defined phenotypes is not yet clear. Reduced representation bisulfite sequencing (RRBS) analysis at single base resolution revealed DNA hypermethylation in all autosomes in DS samples. We hypothesize that such global hypermethylation may be mediated by down-regulation of TET family genes involved in DNA demethylation, and down-regulation of REST/NRSF involved in transcriptional and epigenetic regulation. Genes located on chr21 were up-regulated by an average of 53% in DS compared to normal villi, while genes with promoter hypermethylation were modestly down-regulated. DNA methylation perturbation was conserved in DS placenta villi and in adult DS peripheral blood leukocytes, and enriched for genes known to be causally associated with DS phenotypes. Our data suggest that global epigenetic changes may occur early in development and contribute to DS phenotypes.

Indexed as

Chromosomes, Human, Pair 21CpG IslandsDioxygenasesDNA-Binding ProteinsDNA MethylationDown SyndromeEpigenesis, GeneticFemaleGene Expression RegulationHumansMaleMixed Function OxygenasesPlacentaPregnancyPromoter Regions, GeneticProto-Oncogene ProteinsDioxygenasesDNA-Binding ProteinsMixed Function OxygenasesProto-Oncogene ProteinsRE1-Silencing Transcription FactorRepressor ProteinsTET1 protein, humanTET2 protein, human

Identifiers

PMID23754950
PMCPMC3675012
OpenAlexW2061191951

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.