Evidence map›Paper›PMID 23754813›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2013

Evolutionary rewiring: a modified prokaryotic gene-regulatory pathway in chloroplasts.

Sujith Puthiyaveetil, Iskander M Ibrahim, John F Allen

Open access · bronzeAbstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Mitochondrial genomes are retained by selective constraints on protein targeting.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  10. Review
  11. Article
  12. Article
  13. Energy, genes and evolution: introduction to an evolutionary synthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Article
  14. Energy, ageing, fidelity and sex: oocyte mitochondrial DNA as a protected genetic template.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Sujith PuthiyaveetilSchool of Biological and Chemical Sciences, Queen Mary University of London, , Mile End Road, London E1 4NS, UK. s.puthiyaveetil@wsu.edu
Iskander M Ibrahim
John F Allen
Queen Mary University of London · GBUniversity College London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photosynthetic electron transport regulates chloroplast gene transcription through the action of a bacterial-type sensor kinase known as chloroplast sensor kinase (CSK). CSK represses photosystem I (PS I) gene transcription in PS I light and thus initiates photosystem stoichiometry adjustment. In cyanobacteria and in non-green algae, CSK homologues co-exist with their response regulator partners in canonical bacterial two-component systems. In green algae and plants, however, no response regulator partner of CSK is found. Yeast two-hybrid analysis has revealed interaction of CSK with sigma factor 1 (SIG1) of chloroplast RNA polymerase. Here we present further evidence for the interaction between CSK and SIG1. We also show that CSK interacts with quinone. Arabidopsis SIG1 becomes phosphorylated in PS I light, which then specifically represses transcription of PS I genes. In view of the identical signalling properties of CSK and SIG1 and of their interactions, we suggest that CSK is a SIG1 kinase. We propose that the selective repression of PS I genes arises from the operation of a gene-regulatory phosphoswitch in SIG1. The CSK-SIG1 system represents a novel, rewired chloroplast-signalling pathway created by evolutionary tinkering. This regulatory system supports a proposal for the selection pressure behind the evolutionary stasis of chloroplast genes.

Indexed as

Biological EvolutionAmino Acid SequenceArabidopsisChloroplastsGene Expression Regulation, PlantMolecular Sequence DataPhotosystem I Protein ComplexProkaryotic CellsSignal TransductionPhotosystem I Protein Complexchloroplast gene regulationchloroplast sensor kinaseco-location for redox regulationredoxsigma factor 1 region 1.1two-component system

Identifiers

PMID23754813
PMCPMC3685462
OpenAlexW2162815010

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.