Evidence map›Paper›PMID 23754421›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Chemical and cytokine features of innate immunity characterize serum and tissue profiles in inflammatory bowel disease.

Charles G Knutson, Aswin Mangerich, Yu Zeng, Arkadiusz R Raczynski, Rosa G Liberman, Pilsoo Kang, Wenjie Ye, Erin G Prestwich, Kun Lu, John S Wishnok and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 112 citations in OpenAlex.

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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Charles G KnutsonDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02138, USA.
Aswin Mangerich
Yu Zeng
Arkadiusz R Raczynski
Rosa G Liberman
Pilsoo Kang
Wenjie Ye
Erin G Prestwich
Kun Lu
John S Wishnok
Joshua R Korzenik
Gerald N Wogan
James G Fox
Peter C Dedon
Steven R Tannenbaum
Biological E (India) · INMassachusetts Institute of Technology · USHarvard University · USUniversity of Konstanz · DE

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 1991 to 2026
$35.3M
TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
Reaction and Diffusion of NO in Biological SystemsP01CA026731 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI TANNENBAUM, STEVEN R · 1985 to 2018
$25.4M
Diagnosis and Pathobiology of Emerging Enterohepatic Helicobacter spp. in MiceR01OD011141 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FOX, JAMES G · 2012 to 2014
$1.2M
NCI NIH HHS CA26731NCI NIH HHS P01 CA026731NIDDK NIH HHS P30 DK043351NIEHS NIH HHS ES002109NIEHS NIH HHS P30 ES002109NIH HHS R01 OD011141
6 · The paper itself

Abstract

Inflammatory bowel disease (IBD) arises from inappropriate activation of the mucosal immune system resulting in a state of chronic inflammation with causal links to colon cancer. Helicobacter hepaticus-infected Rag2(-/-) mice emulate many aspects of human IBD, and our recent work using this experimental model highlights the importance of neutrophils in the pathology of colitis. To define molecular mechanisms linking colitis to the identity of disease biomarkers, we performed a translational comparison of protein expression and protein damage products in tissues of mice and human IBD patients. Analysis in inflamed mouse colons identified the neutrophil- and macrophage-derived damage products 3-chlorotyrosine (Cl-Tyr) and 3-nitrotyrosine, both of which increased with disease duration. Analysis also revealed higher Cl-Tyr levels in colon relative to serum in patients with ulcerative colitis and Crohn disease. The DNA chlorination damage product, 5-chloro-2'-deoxycytidine, was quantified in diseased human colon samples and found to be present at levels similar to those in inflamed mouse colons. Multivariate analysis of these markers, together with serum proteins and cytokines, revealed a general signature of activated innate immunity in human IBD. Signatures in ulcerative colitis sera were strongly suggestive of neutrophil activity, and those in Crohn disease and mouse sera were suggestive of both macrophage and neutrophil activity. These data point to innate immunity as a major determinant of serum and tissue profiles and provide insight into IBD disease processes.

Indexed as

Immunity, InnateAcute-Phase ProteinsAnimalsBiomarkersChemokinesCytokinesDeoxycytidineDisease Models, AnimalDNA-Binding ProteinsDNA DamageFemaleHelicobacter hepaticusHelicobacter InfectionsHumansInflammatory Bowel DiseasesMale3-chlorotyrosine3-nitrotyrosine5-chloro-2'-deoxycytidineAcute-Phase ProteinsBiomarkersChemokinesCytokinesDeoxycytidineDNA-Binding ProteinsRag2 protein, mouseTyrosinegranulocytemyeloperoxidasenitric oxideoxidative stress

Identifiers

PMID23754421
PMCPMC3696795
OpenAlexW2013824710

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.