Evidence map›Paper›PMID 23754415›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Differential control of seed primary dormancy in Arabidopsis ecotypes by the transcription factor SPATULA.

Fabián E Vaistij, Yinbo Gan, Steven Penfield, Alison D Gilday, Anuja Dave, Zhesi He, Eve-Marie Josse, Giltsu Choi, Karen J Halliday, Ian A Graham

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
11.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 126 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Physiology and Transcriptome Analysis of Exogenous GACurrent issues in molecular biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Overexpression ofInternational journal of molecular sciences · 2024
    Article
  10. Molecular mechanisms underlying the signal perception and transduction during seed germination.Molecular breeding : new strategies in plant improvement · 2024
    Review
  11. Article
  12. Overexpression of theJournal of fungi (Basel, Switzerland) · 2023
    Article
  13. Article
  14. Article
  15. Underlying Biochemical and Molecular Mechanisms for Seed Germination.International journal of molecular sciences · 2022
    Review
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Fabián E VaistijCentre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom.
Yinbo Gan
Steven Penfield
Alison D Gilday
Anuja Dave
Zhesi He
Eve-Marie Josse
Giltsu Choi
Karen J Halliday
Ian A Graham
University of York · GBUniversity of Edinburgh · GBKorea Advanced Institute of Science and Technology · KR

Funding

Biotechnology and Biological Sciences Research Council BB/E000541/1Biotechnology and Biological Sciences Research Council BB/F005237/1Biotechnology and Biological Sciences Research Council BB/F005296/1Biotechnology and Biological Sciences Research Council BB/J000949/1
6 · The paper itself

Abstract

Freshly matured seeds exhibit primary dormancy, which prevents germination until environmental conditions are favorable. The establishment of dormancy occurs during seed development and involves both genetic and environmental factors that impact on the ratio of two antagonistic phytohormones: abscisic acid (ABA), which promotes dormancy, and gibberellic acid, which promotes germination. Although our understanding of dormancy breakage in mature seeds is well advanced, relatively little is known about the mechanisms involved in establishing dormancy during seed maturation. We previously showed that the SPATULA (SPT) transcription factor plays a key role in regulating seed germination. Here we investigate its role during seed development and find that, surprisingly, it has opposite roles in setting dormancy in Landsberg erecta and Columbia Arabidopsis ecotypes. We also find that SPT regulates expression of five transcription factor encoding genes: ABA-INSENSITIVE4 (ABI4) and ABI5, which mediate ABA signaling; REPRESSOR-OF-GA (RGA) and RGA-LIKE3 involved in gibberellic acid signaling; and MOTHER-OF-FT-AND-TFL1 (MFT) that we show here promotes Arabidopsis seed dormancy. Although ABI4, RGA, and MFT are repressed by SPT, ABI5 and RGL3 are induced. Furthermore, we show that RGA, MFT, and ABI5 are direct targets of SPT in vivo. We present a model in which SPT drives two antagonistic "dormancy-repressing" and "dormancy-promoting" routes that operate simultaneously in freshly matured seeds. Each of these routes has different impacts and this in turn explains the opposite effect of SPT on seed dormancy of the two ecotypes analyzed here.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantGenes, PlantGerminationMutationPlant DormancySpecies SpecificityArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsSPT protein, Arabidopsischromatin immunoprecipitationphytohormone analysestranscriptomic analyses

Identifiers

PMID23754415
PMCPMC3696787
OpenAlexW2171774418

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.