Evidence map›Paper›PMID 23751421›Full record

ArticleAntiviral therapy2013

Resistance to tenofovir-based regimens during treatment failure of subtype C HIV-1 in South Africa.

Christopher J Hoffmann, Johanna Ledwaba, Jin-Fen Li, Victoria Johnston, Gillian Hunt, Katherine L Fielding, Richard E Chaisson, Gavin J Churchyard, Alison D Grant, Jeffrey A Johnson and 2 more

Open access · greenAbstract read
In one paragraph

Article in Antiviral therapy, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Christopher J HoffmannJohns Hopkins University School of Medicine, Baltimore, MD, USA. choffmann@jhmi.edu.
Johanna Ledwaba
Jin-Fen Li
Victoria Johnston
Gillian Hunt
Katherine L Fielding
Richard E Chaisson
Gavin J Churchyard
Alison D Grant
Jeffrey A Johnson
Salome Charalambous
Lynn Morris
London School of Hygiene & Tropical Medicine · GBNational Health Laboratory Service · ZAAurum Institute · ZACenters for Disease Control and Prevention · USJohns Hopkins University · USUniversity of the Witwatersrand · ZA

Funding

Vaccine Response and Immunotherapeutics SWGP30AI094189 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Richard E. Chaisson · 2012 to 2026
$67.0M
UNDERLYING MECHANISMS OF SCHISTOSOME/SNAIL COMPATIBILITYR01AI016137 · NIAID · OREGON STATE UNIVERSITY · PI BAYNE, CHRISTOPHER JEFFREY · 1989 to 2012
$3.1M
DOT-HAART for HIV-Infected South African AdultsR01AI055359 · NIAID · JOHNS HOPKINS UNIVERSITY · PI CHAISSON, RICHARD E. · 2003 to 2008
$2.6M
CAUSES OF AND ASSOCIATIONS WITH DEATH DURING LONG TERM HAART IN AFRICAK23AI083099 · NIAID · JOHNS HOPKINS UNIVERSITY · PI HOFFMANN, CHRISTOPHER J · 2010 to 2014
$671k
Underlying mechanisms of schistosome/snail compatibilityR21AI016137 · NIAID · OREGON STATE UNIVERSITY · PI BAYNE, CHRISTOPHER JEFFREY · 2001 to 2001
$273k
SCHISTOSOME-SNAIL COMPATIBILITY: UNDERLYING MECHANISMSR22AI016137 · NIAID · OREGON STATE UNIVERSITY · PI BAYNE, CHRISTOPHER JEFFREY · 1985 to 1991
–
Medical Research Council MR/K012126/1NIAID NIH HHS AI016137NIAID NIH HHS AI083099NIAID NIH HHS AI5535901NIAID NIH HHS K23 AI083099NIAID NIH HHS P30 AI094189NIAID NIH HHS R01 AI016137NIAID NIH HHS R21 AI016137Wellcome Trust
6 · The paper itself

Abstract

backgroundTenofovir disoproxil fumarate (TDF) is increasingly available for patients infected with subtype C HIV-1. This subtype is reported to develop the principal TDF resistance mutation in the HIV reverse transcriptase, K65R, with greater propensity than other subtypes. We sought to describe K65R development during TDF use in a cohort of patients infected with subtype C HIV.

methodsUsing a prospectively followed cohort with 6 monthly HIV RNA assays, we identified virological failure (defined as an HIV RNA > 1,000 copies/ml) during treatment that included TDF. Residual serum, stored at the time of the HIV RNA assay, was used for consensus sequencing and allele-specific PCR. We assessed prevalence of resistance at failure during TDF-containing treatment and associated factors.

resultsAmong 1,682 patients on a TDF-containing regimen, 270 developed failure of which 40 were assessed for resistance. By sequencing, the K65R was identified in 5 (12%), major non-nucleoside reverse transcriptase inhibitor mutations in 24 (57%) and the M184V/I in 12 (28%) patients. The K65R was associated with lower HIV RNA at failure (HIV RNA 3.3 versus 4.2 log10 copies/ml) and prior stavudine exposure. An additional five patients had minority K65R populations identified by allele-specific PCR.

conclusionsThese data suggest that the K65R prevalence at virological failure is moderately higher in our subtype C population than some non-subtype C HIV cohorts. However, we did not find that the K65R was highly selected in HIV-1 subtype-C-infected patients with up to 6 months of failure of a TDF-containing regimen.

Indexed as

AdenineAdultAnti-HIV AgentsAntiretroviral Therapy, Highly ActiveCD4 Lymphocyte CountDrug Resistance, ViralFemaleGenotypeHIV-1HIV InfectionsHumansMaleMiddle AgedMutationOrganophosphonatesReverse Transcriptase InhibitorsAdenineAnti-HIV AgentsOrganophosphonatesReverse Transcriptase InhibitorsTenofovir

Identifiers

PMID23751421
PMCPMC4046272
OpenAlexW1974444257

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.