Evidence map›Paper›PMID 23749998›Full record

ArticleThe Journal of biological chemistry2013

Mediator complex recruits epigenetic regulators via its two cyclin-dependent kinase subunits to repress transcription of immune response genes.

Taiki Tsutsui, Rikiya Fukasawa, Kaori Shinmyouzu, Reiko Nakagawa, Kazuyuki Tobe, Aki Tanaka, Yoshiaki Ohkuma

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 75 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Protein arginine methylation in transcription and epigenetic regulation.Frontiers in epigenetics and epigenomics · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. CDK8-Novel Therapeutic Opportunities.Pharmaceuticals (Basel, Switzerland) · 2019
    Review
  16. Disruption of cardiac Med1 inhibits RNA polymerase II promoter occupancy and promotes chromatin remodeling.American journal of physiology. Heart and circulatory physiology · 2019
    Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Taiki TsutsuiFrom the Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, and.
Rikiya FukasawaFrom the Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, and.
Kaori Shinmyouzuthe Mass Spectrometry Analysis Unit, RIKEN Center for Developmental Biology, 2-2-3 Minatojima-minamimachi, Chuo-ku, Kobe 650-0047, Japan.
Reiko Nakagawathe Mass Spectrometry Analysis Unit, RIKEN Center for Developmental Biology, 2-2-3 Minatojima-minamimachi, Chuo-ku, Kobe 650-0047, Japan.
Kazuyuki Tobethe First Department of Internal Medicine, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan and.
Aki TanakaFrom the Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, and.
Yoshiaki OhkumaFrom the Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, and. Electronic address: ohkumay@pha.u-toyama.ac.jp.
Gene Therapy Laboratory · FRRIKEN Center for Computational Science · JPUniversity of Toyama · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Mediator complex (Mediator) plays pivotal roles in activating transcription by RNA polymerase II, but relatively little is known about its roles in repression. Here, we identified the histone arginine methyltransferase PRMT5 and WD repeat protein 77/methylosome protein 50 (WDR77/MEP50) as Mediator cyclin-dependent kinase (CDK)-interacting proteins and studied the roles of PRMT5 in the transcriptional regulation of CCAAT enhancer-binding protein (C/EBP) β target genes. First, we purified CDK8- and CDK19-containing complexes from HeLa nuclear extracts and subjected these purified complexes to mass spectrometric analyses. These experiments revealed that two Mediator CDKs, CDK8 and CDK19, individually interact with PRMT5 and WDR77, and their interactions with PRMT5 cause transcriptional repression of C/EBPβ target genes by regulating symmetric dimethylation of histone H4 arginine 3 (H4R3me2s) in the promoter regions of those genes. Furthermore, the recruitment of the DNA methyltransferase DNMT3A correlated with H4R3 dimethylation potentially leading to DNA methylation at the promoter proximal region and tight inhibition of preinitiation complex formation. In vertebrates, C/EBPβ regulates many genes involved in immune responses and cell differentiation. These findings shed light on the molecular mechanisms of the repressive roles of Mediator CDKs in transcription of C/EBPβ target genes and might provide clues that enable future studies of the functional associations between Mediators and epigenetic regulation.

Indexed as

Epigenesis, GeneticTranscription, GeneticArginineCCAAT-Enhancer-Binding Protein-betaCell ExtractsCyclin-Dependent Kinase 8Cyclin-Dependent KinasesDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3AGene Knockdown TechniquesHeLa CellsHistonesHumansImmunityMediator ComplexMethylationArginineCCAAT-Enhancer-Binding Protein-betaCDK19 protein, humanCDK8 protein, humanCEBPB protein, humanCell ExtractsCyclin-Dependent Kinase 8Cyclin-Dependent KinasesDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNMT3A protein, humanHistonesMediator ComplexPRMT5 protein, humanProtein-Arginine N-MethyltransferasesProtein SubunitsRepressor ProteinsTranscription FactorsWDR77 protein, humanCDK (Cyclin-dependent Kinase)DNA MethyltransferasePhorbol EstersRNA Polymerase IIsiRNATranscription Regulation

Identifiers

PMID23749998
PMCPMC3774365
OpenAlexW2008979236

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.