Evidence map›Paper›PMID 23749980›Full record

ArticleJournal of bacteriology2013

The Escherichia coli CydX protein is a member of the CydAB cytochrome bd oxidase complex and is required for cytochrome bd oxidase activity.

Caitlin E VanOrsdel, Shantanu Bhatt, Rondine J Allen, Evan P Brenner, Jessica J Hobson, Aqsa Jamil, Brittany M Haynes, Allyson M Genson, Matthew R Hemm

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 105 citations in OpenAlex.

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  7. Cellular function of the GndA microprotein during heat shock.bioRxiv : the preprint server for biology · 2025
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  13. Large Roles of Small Proteins.Annual review of microbiology · 2024
    Review
  14. Article
  15. Anaerobiosis, a neglected factor in phage-bacteria interactions.Applied and environmental microbiology · 2023
    Article
  16. Review
  17. Article
  18. Article
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  20. Identification of Key Factors for Anoxic Survival ofInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Caitlin E VanOrsdelDepartment of Biological Sciences, Towson University, Towson, Maryland, USA.
Shantanu Bhatt
Rondine J Allen
Evan P Brenner
Jessica J Hobson
Aqsa Jamil
Brittany M Haynes
Allyson M Genson
Matthew R Hemm
Towson University · USEunice Kennedy Shriver National Institute of Child Health and Human Development · US

Funding

Role of Small Transmembrane Proteins in Cytochrome bd Oxidase ActivityR15AI094548 · NIAID · TOWSON UNIVERSITY · PI HEMM, MATTHEW ROBERT · 2011 to 2011
$389k
Intramural NIH HHSNIAID NIH HHS 1R15AI094548-01NIAID NIH HHS R15 AI094548
6 · The paper itself

Abstract

Cytochrome bd oxidase operons from more than 50 species of bacteria contain a short gene encoding a small protein that ranges from ∼30 to 50 amino acids and is predicted to localize to the cell membrane. Although cytochrome bd oxidases have been studied for more than 70 years, little is known about the role of this small protein, denoted CydX, in oxidase activity. Here we report that Escherichia coli mutants lacking CydX exhibit phenotypes associated with reduced oxidase activity. In addition, cell membrane extracts from ΔcydX mutant strains have reduced oxidase activity in vitro. Consistent with data showing that CydX is required for cytochrome bd oxidase activity, copurification experiments indicate that CydX interacts with the CydAB cytochrome bd oxidase complex. Together, these data support the hypothesis that CydX is a subunit of the CydAB cytochrome bd oxidase complex that is required for complex activity. The results of mutation analysis of CydX suggest that few individual amino acids in the small protein are essential for function, at least in the context of protein overexpression. In addition, the results of analysis of the paralogous small transmembrane protein AppX show that the two proteins could have some overlapping functionality in the cell and that both have the potential to interact with the CydAB complex.

Indexed as

Amino Acid SequenceCytochrome b GroupCytochromesElectron Transport Chain Complex ProteinsEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicMolecular Sequence DataMutationOxidoreductasesPhenotypecytochrome bd terminal oxidase complex, E coliCytochrome b GroupCytochromesElectron Transport Chain Complex ProteinsEscherichia coli ProteinsOxidoreductases

Identifiers

PMID23749980
PMCPMC3754557
OpenAlexW2123800743

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.