Evidence map›Paper›PMID 23749978›Full record

ArticleJournal of bacteriology2013

The Streptococcus mutans aminotransferase encoded by ilvE is regulated by CodY and CcpA.

Brendaliz Santiago, Maksym Marek, Roberta C Faustoferri, Robert G Quivey

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. CcpA and CodY Regulate CRISPR-Cas System ofMicrobiology spectrum · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. CcpA and CodY Coordinate Acetate Metabolism in Streptococcus mutans.Applied and environmental microbiology · 2017
    Article
  15. Review
  16. Stress Physiology of Lactic Acid Bacteria.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Brendaliz SantiagoCenter for Oral Biology, University of Rochester School of Medicine and Dentistry, Rochester, New York, USA.
Maksym Marek
Roberta C Faustoferri
Robert G Quivey
University of Rochester · US

Funding

Training Program in Oral ScienceT90DE021985 · NIDCR · UNIVERSITY OF ROCHESTER · PI OVITT, CATHERINE, YULE, DAVID I · 2011 to 2021
$5.6M
Fitness profiling of the Streptococcus mutans genomeR01DE017425 · NIDCR · UNIVERSITY OF ROCHESTER · PI QUIVEY, ROBERT G · 2007 to 2011
$3.5M
Low pH-mediated membrane biosynthesis in S. mutans.R01DE017157 · NIDCR · UNIVERSITY OF ROCHESTER · PI QUIVEY, ROBERT G · 2006 to 2010
$1.8M
NIDCR NIH HHS DE017157NIDCR NIH HHS DE017425NIDCR NIH HHS R01 DE017157NIDCR NIH HHS R01 DE017425NIDCR NIH HHS T90 DE021985NIDCR NIH HHS T90DE021985-2
6 · The paper itself

Abstract

The aminotransferase IlvE was implicated in the acid tolerance response of Streptococcus mutans when a mutation in its gene resulted in an acid-sensitive phenotype (B. Santiago, M. MacGilvray, R. C. Faustoferri, and R. G. Quivey, Jr., J. Bacteriol. 194:2010-2019, 2012). The phenotype suggested that amino acid metabolism is important for acid adaptation, as turnover of branched-chain amino acids (bcAAs) could provide important signals to modulate expression of genes involved in the adaptive process. Previous studies have demonstrated that ilvE is regulated in response to the external pH, though the mechanism is not yet established. CodY and CcpA have been shown to regulate expression of branched-chain amino acid biosynthetic genes, suggesting that the ability to sense carbon flow and the nutritional state of the cell also plays a role in the regulation of ilvE. Electrophoretic mobility shift assays using the ilvE promoter and a purified recombinant CodY protein provided evidence of the physical interaction between CodY and ilvE. In order to elucidate the signals that contribute to ilvE regulation, cat reporter fusions were utilized. Transcriptional assays demonstrated that bcAAs are signaling molecules involved in the repression of ilvE through regulation of CodY. In a codY deletion background, ilvE transcription was elevated, indicating that CodY acts a repressor of ilvE transcription. Conversely, in a ccpA deletion background, ilvE transcription was reduced, showing that CcpA activated ilvE transcription. The effects of both regulators were directly relevant for transcription of ilvE under conditions of acid stress, demonstrating that both regulators play a role in acid adaptation.

Indexed as

Bacterial ProteinsBacteriological TechniquesDNA, IntergenicGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicHydrogen-Ion ConcentrationIsoleucinePromoter Regions, GeneticRecombinant ProteinsStreptococcus mutansTransaminasesTranscription, GeneticBacterial ProteinsDNA, IntergenicIsoleucineRecombinant ProteinsTransaminases

Identifiers

PMID23749978
PMCPMC3754572
OpenAlexW2018189646

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.