Evidence map›Paper›PMID 23749977›Full record

ArticleJournal of bacteriology2013

Large linear plasmids of Borrelia species that cause relapsing fever.

Shelley Campeau Miller, Stephen F Porcella, Sandra J Raffel, Tom G Schwan, Alan G Barbour

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Biology · 2021
    Review
  9. Review
  10. Genetic Manipulation ofCurrent issues in molecular biology · 2021
    Review
  11. Review
  12. Assessing the Contribution of an HtrA Family Serine Protease DuringFrontiers in cellular and infection microbiology · 2019
    Article
  13. Article
  14. Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Article
  16. Relapsing Fevers: Neglected Tick-Borne Diseases.Frontiers in cellular and infection microbiology · 2018
    Review
  17. Article
  18. Chromosome and Megaplasmid Sequences ofGenome announcements · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Shelley Campeau MillerDepartments of Microbiology and Molecular Genetics, Medicine, and Ecology and Evolutionary Biology, University of California Irvine, Irvine, California, USA. smiller@mednet.ucla.edu
Stephen F Porcella
Sandra J Raffel
Tom G Schwan
Alan G Barbour
National Institute of Allergy and Infectious Diseases · USUniversity of California, Irvine · USNational Institutes of Health · US

Funding

Infectious Diseases Research Technologies Core - RMLZICAI001052 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CHERRY, JAMES · 2009 to 2025
$133.3M
MOLECULAR BASIS OF BORRELIA PATHOGENESISR37AI024424 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2001 to 2010
$3.5M
Adaptations Of Borrelia Spirochetes To Their Tick Vectors And Mammalian HostsZIAAI000492 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI SCHWAN, TOM · 2009 to 2014
$3.3M
MOLECULAR BASIS OF BORRELIA PATHOGENESISR01AI024424 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI BARBOUR, ALAN G. · 1987 to 2000
$339k
Intramural NIH HHSNIAID NIH HHS AI24424NIAID NIH HHS R01 AI024424NIAID NIH HHS R37 AI024424
6 · The paper itself

Abstract

Borrelia species of relapsing fever (RF) and Lyme disease (LD) lineages have linear chromosomes and both linear and circular plasmids. Unique to RF species, and little characterized to date, are large linear plasmids of ∼160 kb, or ∼10% of the genome. By a combination of Sanger and next-generation methods, we determined the sequences of large linear plasmids of two New World species: Borrelia hermsii, to completion of its 174-kb length, and B. turicatae, partially to 114 kb of its 150 kb. These sequences were then compared to corresponding sequences of the Old World species B. duttonii and B. recurrentis and to plasmid sequences of LD Borrelia species. The large plasmids were largely colinear, except for their left ends, about 27 kb of which was inverted in New World species. Approximately 60% of the B. hermsii lp174 plasmid sequence was repetitive for 6 types of sequence, and half of its open reading frames encoded hypothetical proteins not discernibly similar to proteins in the database. The central ∼25 kb of all 4 linear plasmids was syntenic for orthologous genes for plasmid maintenance or partitioning in Borrelia species. Of all the sequenced linear and circular plasmids in Borrelia species, the large plasmid's putative partition/replication genes were most similar to those of the 54-kb linear plasmids of LD species. Further evidence for shared ancestry was the observation that two of the hypothetical proteins were predicted to be structurally similar to the LD species' CspA proteins, which are encoded on the 54-kb plasmids.

Indexed as

AnimalsBacterial ProteinsBorreliaBorrelia InfectionsFemaleGene Expression Regulation, BacterialGenome, BacterialMiceMice, SCIDPhylogenyPlasmidsVirulenceBacterial Proteins

Identifiers

PMID23749977
PMCPMC3754566
OpenAlexW2025454557

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.