Evidence map›Paper›PMID 23749172›Full record

ArticleVirus genes2013

Evolution and homologous recombination of the hemagglutinin-esterase gene sequences from porcine torovirus.

Yingying Cong, Dante S Zarlenga, Juergen A Richt, Xin Wang, Yang Wang, Siqingaowa Suo, Jingfei Wang, Yudong Ren, Xiaofeng Ren

Open access · bronzeAbstract read
In one paragraph

Article in Virus genes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Whole genome analysis of Japanese bovine toroviruses reveals natural recombination between porcine and bovine toroviruses.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Yingying CongCollege of Veterinary Medicine, Northeast Agricultural University, 59 Mucai Street, Xiangfang District, Harbin 150030, China.
Dante S Zarlenga
Juergen A Richt
Xin Wang
Yang Wang
Siqingaowa Suo
Jingfei Wang
Yudong Ren
Xiaofeng Ren
Northeast Agricultural University · CNBeltsville Agricultural Research Center · USChinese Academy of Agricultural Sciences · CNKansas State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The objective of the present study was to gain new insights into the evolution, homologous recombination, and selection pressures imposed on the porcine torovirus (PToV), by examining the changes in the hemagglutinin-esterase (HE) gene. The most recent common ancestor of PToV was estimated to have emerged 62 years ago based upon HE gene sequence data obtained from PToV isolates originating from Spain, South Korea, Netherlands, Hungary, and Italy and using the HE gene of Bovine torovirus isolates Niigata1 (AB661456) and Niigata3 (AB661458) as outgroups. The HE gene sequence data segregated all the PToV isolates into two well-supported monophyletic groups; however, various isolates from Spain, Italy, and South Korea did not segregate geographically suggesting very recent translocation of the viruses to these localities. Evidence of recombination was observed between two South Korean isolates that partitioned into two distinct subclades. Data further suggest that most of the nucleotides in the HE gene are under negative selection; however, changes within codon 237 showed an evidence of positive selection.

Indexed as

Evolution, MolecularHomologous RecombinationAnimalsBase SequenceHemagglutinins, ViralItalyMolecular Sequence DataNetherlandsNucleic Acid ConformationPhylogenyRepublic of KoreaSelection, GeneticSpainSwineSwine DiseasesTorovirushemagglutinin esteraseHemagglutinins, ViralViral Fusion Proteins

Identifiers

PMID23749172
PMCPMC7088831
OpenAlexW2091090964

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.