Evidence map›Paper›PMID 23748922›Full record

ArticleNature communications2013

A common functional promoter variant links CNR1 gene expression to HDL cholesterol level.

Q Feng, K C Vickers, M P Anderson, M G Levin, W Chen, D G Harrison, R A Wilke

Abstract read
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. The Endocannabinoid System and Heart Disease: The Role of Cannabinoid Receptor Type 2.Cardiovascular & hematological disorders drug targets · 2018
    Review
  9. CBAdvances in pharmacology (San Diego, Calif.) · 2017
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Q FengDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, TN, USA. QiPing.Feng@vanderbilt.edu
K C Vickers
M P Anderson
M G Levin
W Chen
D G Harrison
R A Wilke

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
REGULATION OF VASCULAR FUNCTION BY THE ENDOTHELIUMR01HL039006 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HARRISON, DAVID G · 1987 to 2017
$5.5M
Pharmacogenetics of obesity and endocannabinergic modulation (POEM)R01DK080007 · NIDDK · VANDERBILT UNIVERSITY · PI WILKE, RUSSELL A. · 2009 to 2012
$1.2M
Circulating microRNAs Control Cholesterol Homeostasis through hepatic mechanismsK22HL113039 · NHLBI · VANDERBILT UNIVERSITY · PI VICKERS, KASEY C · 2013 to 2015
$746k
Intramural NIH HHS Z99 HL999999NCRR NIH HHS UL1 RR024975NHLBI NIH HHS K22 HL113039NHLBI NIH HHS R01 HL039006NIDDK NIH HHS R01 DK080007
6 · The paper itself

Abstract

Type 1 cannabinoid receptor blockers increase high-density lipoprotein cholesterol levels. Although genetic variation in the type 1 cannabinoid receptor--encoded by the CNR1 gene--is known to influence high-density lipoprotein cholesterol level as well, human studies conducted to date have been limited to genetic markers such as haplotype-tagging single nucleotide polymorphisms. Here we identify rs806371 in the CNR1 promoter as the causal variant. We re-sequence the CNR1 gene and genotype all variants in a DNA biobank linked to comprehensive electronic medical records. By testing each variant for association with high-density lipoprotein cholesterol level in a clinical practice-based setting, we localize a putative functional allele to a 100-bp window in the 5'-flanking region. Assessment of variants in this window for functional impact on electrophoretic mobility shift assay identifies rs806371 as a novel regulatory binding element. Reporter gene assays confirm that rs806371 reduces gene expression, thereby linking CNR1 gene variation to high-density lipoprotein cholesterol level in humans.

Indexed as

Gene Expression RegulationPromoter Regions, GeneticCholesterol, HDLChromosomes, HumanCohort StudiesDemographyDNAElectrophoretic Mobility Shift AssayGenes, ReporterHaplotypesHomozygoteHumansMiddle AgedMolecular Sequence DataPolymorphism, Single NucleotideProtein BindingCholesterol, HDLCNR1 protein, humanDNAReceptor, Cannabinoid, CB1

Identifiers

PMID23748922
PMCPMC3873874

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.