Evidence map›Paper›PMID 23748380›Full record

ArticleNature structural & molecular biology2013

Structural mimicry in transcription regulation of human RNA polymerase II by the DNA helicase RECQL5.

Susanne A Kassube, Martin Jinek, Jie Fang, Susan Tsutakawa, Eva Nogales

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Nature structural & molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 37 citations in OpenAlex.

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  16. Covalent Chemical Cochaperones of the p300/CBP GACKIX Domain.Chembiochem : a European journal of chemical biology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Susanne A KassubeBiophysics Graduate Group, University of California, Berkeley, California, USA.
Martin Jinek
Jie Fang
Susan Tsutakawa
Eva Nogales
Lawrence Berkeley National Laboratory · USHoward Hughes Medical Institute · USUniversity of California, Berkeley · USUniversity of Zurich · CH

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Structural Studies of the Eukaryotic Transcription Initiation MachineryR01GM063072 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOGALES, EVA · 2001 to 2016
$2.5M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
Howard Hughes Medical Institute DE-AC02-05CH11231NCI NIH HHS P01 CA092584NIGMS NIH HHS GM63072NIGMS NIH HHS R01 GM063072NIGMS NIH HHS R01 GM105404
6 · The paper itself

Abstract

RECQL5 is a member of the highly conserved RecQ family of DNA helicases involved in DNA repair. RECQL5 interacts with RNA polymerase II (Pol II) and inhibits transcription of protein-encoding genes by an unknown mechanism. We show that RECQL5 contacts the Rpb1 jaw domain of Pol II at a site that overlaps with the binding site for the transcription elongation factor TFIIS. Our cryo-EM structure of elongating Pol II arrested in complex with RECQL5 shows that the RECQL5 helicase domain is positioned to sterically block elongation. The crystal structure of the RECQL5 KIX domain reveals similarities with TFIIS, and binding of RECQL5 to Pol II interferes with the ability of TFIIS to promote transcriptional read-through in vitro. Together, our findings reveal a dual mode of transcriptional repression by RECQL5 that includes structural mimicry of the Pol II-TFIIS interaction.

Indexed as

Molecular MimicryTranscription Elongation, GeneticAmino Acid SequenceBinding SitesConserved SequenceCryoelectron MicroscopyCrystallography, X-RayHumansModels, MolecularMolecular Docking SimulationMolecular Sequence DataProtein ConformationProtein Interaction MappingProtein Structure, TertiaryRecQ HelicasesRNA Polymerase IIRecQ HelicasesRECQL5 protein, humanRNA Polymerase IIRNA polymerase II largest subunitTranscriptional Elongation Factorstranscription factor S-II

Identifiers

PMID23748380
PMCPMC3702667
OpenAlexW1966866692

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.