Evidence map›Paper›PMID 23747354›Full record

ArticleGene2013

Over-expression of the miRNA cluster at chromosome 14q32 in the alcoholic brain correlates with suppression of predicted target mRNA required for oligodendrocyte proliferation.

A M Manzardo, S Gunewardena, M G Butler

Open access · greenAbstract read
In one paragraph

Article in Gene, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Noncoding RNA therapeutics for substance use disorder.Advances in drug and alcohol research · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Emerging roles for ncRNAs in alcohol use disorders.Alcohol (Fayetteville, N.Y.) · 2017
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

A M ManzardoDepartment of Psychiatry and Behavioral Sciences, University of Kansas School of Medicine, Kansas City, KS 66160, USA. amanzardo@kumc.edu
S Gunewardena
M G Butler
University of Kansas · US

Funding

Research Design and Analysis Core (RDAC)P30HD002528 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI LITTLE, TODD D. · 1985 to 2015
$22.1M
Brain Tissue Resource Centre for Alcohol ResearchR28AA012725 · NIAAA · UNIVERSITY OF SYDNEY · PI Greg Trevor Sutherland · 2012 to 2026
$7.0M
BRAIN TISSUE RESOURCE CENTER FOR ALCOHOL RESEARCHR24AA012725 · NIAAA · UNIVERSITY OF SYDNEY · PI KRIL, JILLIAN JUNE · 2000 to 2011
$2.2M
Danish Study of Perinatal Neurodevelopmental Contributions to Adult AlcoholismK01AA015935 · NIAAA · UNIVERSITY OF KANSAS MEDICAL CENTER · PI MANZARDO, ANN MICHELLE · 2007 to 2009
$384k
NIAAA NIH HHS K01 AA015935NIAAA NIH HHS K01-AA015935NIAAA NIH HHS R24 AA012725NIAAA NIH HHS R24AA012725NIAAA NIH HHS R28 AA012725NICHD NIH HHS HD02528NICHD NIH HHS P30 HD002528
6 · The paper itself

Abstract

We examined miRNA expression from RNA isolated from the frontal cortex (Broadman area 9) of 9 alcoholics (6 males, 3 females, mean age 48 years) and 9 matched controls using both the Affymetrix GeneChip miRNA 2.0 and Human Exon 1.0 ST Arrays to further characterize genetic influences in alcoholism and the effects of alcohol consumption on predicted target mRNA expression. A total of 12 human miRNAs were significantly up-regulated in alcohol dependent subjects (fold change≥1.5, false discovery rate (FDR)≤0.3; p<0.05) compared with controls including a cluster of 4 miRNAs (e.g., miR-377, miR-379) from the maternally expressed 14q32 chromosome region. The status of the up-regulated miRNAs was supported using the high-throughput method of exon microarrays showing decreased predicted mRNA gene target expression as anticipated from the same RNA aliquot. Predicted mRNA targets were involved in cellular adhesion (e.g., THBS2), tissue differentiation (e.g., CHN2), neuronal migration (e.g., NDE1), myelination (e.g., UGT8, CNP) and oligodendrocyte proliferation (e.g., ENPP2, SEMA4D1). Our data support an association of alcoholism with up-regulation of a cluster of miRNAs located in the genomic imprinted domain on chromosome 14q32 with their predicted gene targets involved with oligodendrocyte growth, differentiation and signaling.

Indexed as

Chromosomes, Human, Pair 14Gene ExpressionMultigene FamilyAdultAlcoholismBrainCell ProliferationCluster AnalysisExonsFemaleGene Expression ProfilingGene Expression RegulationHumansMaleMicroRNAsMiddle AgedMicroRNAsRNA, Messenger14q32 chromosome region3′ untranslated regions3′UTRAlcoholismcDNAcomplementary deoxyribonucleic aciddeoxyribonucleic acidDNAExon expressionfalse discovery rateFDRGC contentguanine-cytosine contentHuman frontal cortexmessenger ribonucleic acidmicro ribonucleic acidmiRNAmiRNA expressionmRNANational Institute of Child Health and Human DevelopmentNational Institute on Alcohol Abuse and AlcoholismncRNANIAAANICHDnon-coding ribonucleic acidOligodendrocyte proliferationPCRPMIpolymerase chain reactionpost mortem intervalreverse transcription polymerase chain reactionribonucleic acidribonucleic acid integrity numberRINRMARNArobust multichip averageRT-PCRscaRNASDsmall Cajal body-specific ribonucleic acidsmall nucleolar ribonucleic acidsnoRNAstandard deviationUCSCUniversity of California, Santa Cruzun-weighted average distanceUPGMA

Identifiers

PMID23747354
PMCPMC3816396
OpenAlexW2076878451

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.