Evidence map›Paper›PMID 23746510›Full record

ArticleBiophysical journal2013

Exponential sum-fitting of dwell-time distributions without specifying starting parameters.

David Landowne, Bin Yuan, Karl L Magleby

Abstract read
In one paragraph

Article in Biophysical journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Resolving Molecular Heterogeneity with Single-Molecule Centrifugation.Journal of the American Chemical Society · 2023
    Article
  3. Article
  4. Article
  5. Single-channel kinetics of BK (Slo1) channels.Frontiers in physiology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

David LandowneDepartment of Physiology and Biophysics, University of Miami Miller School of Medicine, Miami, FL, USA. DL@miami.edu
Bin Yuan
Karl L Magleby

Funding

MECHANISMS OF IONIC CHANNEL ACTIVITYR01AR032805 · NIAMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MAGLEBY, KARL L · 1986 to 2012
$4.3M
MECHANISMS OF IONIC CHANNEL ACTIVITYR37AR032805 · NIAMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MAGLEBY, KARL L · 1988 to 1997
–
NIAMS NIH HHS AR032805NIAMS NIH HHS R01 AR032805
6 · The paper itself

Abstract

Fitting dwell-time distributions with sums of exponentials is widely used to characterize histograms of open- and closed-interval durations recorded from single ion channels, as well as for other physical phenomena. However, it can be difficult to identify the contributing exponential components. Here we extend previous methods of exponential sum-fitting to present a maximum-likelihood approach that consistently detects all significant exponentials without the need for user-specified starting parameters. Instead of searching for exponentials, the fitting starts with a very large number of initial exponentials with logarithmically spaced time constants, so that none are missed. Maximum-likelihood fitting then determines the areas of all the initial exponentials keeping the time constants fixed. In an iterative manner, with refitting after each step, the analysis then removes exponentials with negligible area and combines closely spaced adjacent exponentials, until only those exponentials that make significant contributions to the dwell-time distribution remain. There is no limit on the number of significant exponentials and no starting parameters need be specified. We demonstrate fully automated detection for both experimental and simulated data, as well as for classical exponential-sum-fitting problems.

Indexed as

Ion Channel GatingIon ChannelsLikelihood FunctionsStatistics as TopicTime FactorsIon Channels

Identifiers

PMID23746510
PMCPMC3672890

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.