Evidence map›Paper›PMID 23745011›Full record

ArticleSIAM review. Society for Industrial and Applied Mathematics2011

Fast Analytical Methods for Macroscopic Electrostatic Models in Biomolecular Simulations.

Zhenli Xu, Wei Cai

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in SIAM review. Society for Industrial and Applied Mathematics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Image Charge Method for Reaction Fields in a Hybrid Ion-Channel Model.Communications in computational physics · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Zhenli XuDepartment of Mathematics and Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China, and Department of Mathematics and Statistics, University of North Carolina, Charlotte, NC 28223 ( xuzl@sjtu.edu.cn ).
Wei Cai

Funding

Fast and Accurate Numerical Methods of Electrostatic Interactions in BiomoleculesR01GM083600 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI CAI, WEI · 2007 to 2010
$1.4M
NIGMS NIH HHS R01 GM083600
6 · The paper itself

Abstract

We review recent developments of fast analytical methods for macroscopic electrostatic calculations in biological applications, including the Poisson-Boltzmann (PB) and the generalized Born models for electrostatic solvation energy. The focus is on analytical approaches for hybrid solvation models, especially the image charge method for a spherical cavity, and also the generalized Born theory as an approximation to the PB model. This review places much emphasis on the mathematical details behind these methods.

Indexed as

electrostatic free energyelectrostatic interactionsfast algorithmgeneralized Born theoryhybrid explicit/implicit solvation modelsimage charge approximationmacroscopic solvent modelsmultipole expansionPoisson–Boltzmann equationreaction field

Identifiers

PMID23745011
PMCPMC3671632

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.