Evidence map›Paper›PMID 23744971›Full record

ReviewILAR journal2012

The human imprintome: regulatory mechanisms, methods of ascertainment, and roles in disease susceptibility.

David A Skaar, Yue Li, Autumn J Bernal, Cathrine Hoyo, Susan K Murphy, Randy L Jirtle

Abstract readReview
In one paragraph

Review in ILAR journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

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  18. Epigenetic Risks of Medically Assisted Reproduction.Journal of clinical medicine · 2022
    Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

David A SkaarDepartment of Oncology, Duke University Medical Center, Durham, North Carolina, USA.
Yue Li
Autumn J Bernal
Cathrine Hoyo
Susan K Murphy
Randy L Jirtle

Funding

Nutrition, Deregulation of Imprinted GenesR01ES016772 · NIEHS · DUKE UNIVERSITY · PI HOYO, CATHRINE · 2009 to 2013
$3.1M
Disparities in cervical cancer precursors and deregulation of imprinted genesR01CA142983 · NCI · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI HOYO, CATHRINE, MURPHY, SUSAN KAY · 2010 to 2014
$3.0M
Obesity and deregulation of imprinted genes in early lifeR01DK085173 · NIDDK · DUKE UNIVERSITY · PI HOYO, CATHRINE, MURPHY, SUSAN KAY · 2010 to 2013
$2.3M
KCNK9 Imprinting in Breast Cancer Progression and MetastasisR01CA155664 · NCI · DUKE UNIVERSITY · PI SEEWALDT, VICTORIA L. · 2011 to 2015
$1.8M
NCI NIH HHS 1R01CA142983NCI NIH HHS 1R01CA15566401NCI NIH HHS R01 CA142983NCI NIH HHS R01 CA155664NIDDK NIH HHS 1R01DK085173NIDDK NIH HHS R01 DK085173NIEHS NIH HHS 1R01ES016772NIEHS NIH HHS R01 ES016772
6 · The paper itself

Abstract

Imprinted genes form a special subset of the genome, exhibiting monoallelic expression in a parent-of-origin-dependent fashion. This monoallelic expression is controlled by parental-specific epigenetic marks, which are established in gametogenesis and early embryonic development and are persistent in all somatic cells throughout life. We define this specific set of cis-acting epigenetic regulatory elements as the imprintome, a distinct and specially tasked subset of the epigenome. Imprintome elements contain DNA methylation and histone modifications that regulate monoallelic expression by affecting promoter accessibility, chromatin structure, and chromatin configuration. Understanding their regulation is critical because a significant proportion of human imprinted genes are implicated in complex diseases. Significant species variation in the repertoire of imprinted genes and their epigenetic regulation, however, will not allow model organisms solely to be used for this crucial purpose. Ultimately, only the human will suffice to accurately define the human imprintome.

Indexed as

Disease SusceptibilityDNA MethylationEpigenesis, GeneticGenomic ImprintingHumansdifferential methylationDNA methylationhistone modificationimprinted geneimprintomemonoallelic expression

Identifiers

PMID23744971
PMCPMC3683658

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.