Evidence map›Paper›PMID 23744077›Full record

ArticleThe Journal of biological chemistry2013

Anti-HIV host factor SAMHD1 regulates viral sensitivity to nucleoside reverse transcriptase inhibitors via modulation of cellular deoxyribonucleoside triphosphate (dNTP) levels.

Sarah M Amie, Michele B Daly, Erin Noble, Raymond F Schinazi, Robert A Bambara, Baek Kim

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 53 citations in OpenAlex.

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  15. The structural basis for cancer drug interactions with the catalytic and allosteric sites of SAMHD1.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Sarah M AmieDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York 14642, USA.
Michele B Daly
Erin Noble
Raymond F Schinazi
Robert A Bambara
Baek Kim
University of Rochester Medical Center · USAtlanta VA Medical Center · USEmory University · US

Funding

Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Carlos del Rio · 2002 to 2026
$74.0M
Training Program in Oral ScienceT90DE021985 · NIDCR · UNIVERSITY OF ROCHESTER · PI OVITT, CATHERINE, YULE, DAVID I · 2011 to 2021
$5.6M
TRAINING PROGRAM IN ORAL SCIENCET32DE007202 · NIDCR · UNIVERSITY OF ROCHESTER · PI QUIVEY, ROBERT G · 1990 to 2010
$5.5M
Replication fidelity and lentiviral pathogenesisR01AI049781 · NIAID · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2002 to 2016
$4.9M
DNA SYNTHESIS AND RECOMBINATION BY HIV DNA POYLMERASER01GM049573 · NIGMS · UNIVERSITY OF ROCHESTER · PI BAMBARA, ROBERT A · 1993 to 2011
$4.0M
Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01GM104198 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2012 to 2018
$2.3M
Targeting PI3K/Akt Cell Survival Pathway as a Novel Anti-HIV TherapyR01AI077401 · NIAID · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2009 to 2012
$1.4M
Replicational Fidelity and Lentivial PathogenesisR56AI049781 · NIAID · EMORY UNIVERSITY · PI KIM, BAEK · 2017 to 2017
$390k
NIAID NIH HHS 5P30-AI-50409NIAID NIH HHS AI049781NIAID NIH HHS AI077401NIAID NIH HHS P30 AI050409NIAID NIH HHS R01 AI049781NIAID NIH HHS R01 AI077401NIAID NIH HHS R56 AI049781NIDCR NIH HHS DE007202NIDCR NIH HHS T32 DE007202NIDCR NIH HHS T90 DE021985NIGMS NIH HHS GM049573NIGMS NIH HHS GM068411NIGMS NIH HHS R01 GM049573NIGMS NIH HHS R01 GM104198NIGMS NIH HHS T32 GM068411
6 · The paper itself

Abstract

Newly identified anti-HIV host factor, SAMHD1, restricts replication of lentiviruses such as HIV-1, HIV-2, and simian immunodeficiency virus in macrophages by enzymatically hydrolyzing and depleting cellular dNTPs, which are the substrates of viral DNA polymerases. HIV-2 and some simian immunodeficiency viruses express viral protein X (VPX), which counteracts SAMHD1 and elevates cellular dNTPs, enhancing viral replication in macrophages. Because nucleoside reverse transcriptase inhibitors (NRTIs), the most commonly used anti-HIV drugs, compete against cellular dNTPs for incorporation into proviral DNA, we tested whether SAMHD1 directly affects the efficacy of NRTIs in inhibiting HIV-1. We found that reduction of SAMHD1 levels with the use of virus-like particles expressing Vpx- and SAMHD1-specific shRNA subsequently elevates cellular dNTPs and significantly decreases HIV-1 sensitivity to various NRTIs in macrophages. However, virus-like particles +Vpx treatment of activated CD4(+) T cells only minimally reduced NRTI efficacy. Furthermore, with the use of HPLC, we could not detect SAMHD1-mediated hydrolysis of NRTI-triphosphates, verifying that the reduced sensitivity of HIV-1 to NRTIs upon SAMHD1 degradation is most likely caused by the elevation in cellular dNTPs.

Indexed as

Blotting, WesternCD4-Positive T-LymphocytesCell LineCells, CulturedDeoxyribonucleosidesDose-Response Relationship, DrugHIV-1Host-Pathogen InteractionsHumansMacrophagesMonomeric GTP-Binding ProteinsNevirapineReverse Transcriptase InhibitorsRNA InterferenceSAM Domain and HD Domain-Containing Protein 1Viral Regulatory and Accessory ProteinsDeoxyribonucleosidesMonomeric GTP-Binding ProteinsNevirapineReverse Transcriptase InhibitorsSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, humanViral Regulatory and Accessory ProteinsZidovudineDNA PolymeraseDNA ReplicationHIV-1MacrophagesNucleoside Nucleotide Analogs

Identifiers

PMID23744077
PMCPMC3711331
OpenAlexW2049786616

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.