Evidence map›Paper›PMID 23744076›Full record

ArticleThe Journal of biological chemistry2013

Cyclin-dependent kinase 9 links RNA polymerase II transcription to processing of ribosomal RNA.

Kaspar Burger, Bastian Mühl, Michaela Rohrmoser, Britta Coordes, Martin Heidemann, Markus Kellner, Anita Gruber-Eber, Vigo Heissmeyer, Katja Strässer, Dirk Eick

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 40 citations in OpenAlex.

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  16. Cell cycle regulation and hematologic malignancies.Blood science (Baltimore, Md.) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Kaspar BurgerFrom the Department of Molecular Epigenetics, Helmholtz Center Munich, Center for Integrated Protein Science Munich, Marchioninistrasse 25, 81377 Munich, Germany.
Bastian MühlFrom the Department of Molecular Epigenetics, Helmholtz Center Munich, Center for Integrated Protein Science Munich, Marchioninistrasse 25, 81377 Munich, Germany.
Michaela RohrmoserFrom the Department of Molecular Epigenetics, Helmholtz Center Munich, Center for Integrated Protein Science Munich, Marchioninistrasse 25, 81377 Munich, Germany.
Britta CoordesGene Center and Department of Biochemistry, Center for Integrated Protein Science Munich, Ludwig Maximilians University of Munich, Feodor-Lynen-Strasse 25, 81377 Munich, Germany, and.
Martin HeidemannFrom the Department of Molecular Epigenetics, Helmholtz Center Munich, Center for Integrated Protein Science Munich, Marchioninistrasse 25, 81377 Munich, Germany.
Markus KellnerFrom the Department of Molecular Epigenetics, Helmholtz Center Munich, Center for Integrated Protein Science Munich, Marchioninistrasse 25, 81377 Munich, Germany.
Anita Gruber-EberFrom the Department of Molecular Epigenetics, Helmholtz Center Munich, Center for Integrated Protein Science Munich, Marchioninistrasse 25, 81377 Munich, Germany.
Vigo HeissmeyerInstitute of Molecular Immunology, Helmholtz Center Munich, Marchioninistrasse 25, 81377 Munich, Germany.
Katja SträsserGene Center and Department of Biochemistry, Center for Integrated Protein Science Munich, Ludwig Maximilians University of Munich, Feodor-Lynen-Strasse 25, 81377 Munich, Germany, and.
Dirk EickFrom the Department of Molecular Epigenetics, Helmholtz Center Munich, Center for Integrated Protein Science Munich, Marchioninistrasse 25, 81377 Munich, Germany,. Electronic address: eick@helmholtz-muenchen.de.
Center for Integrated Protein Science Munich · DEHelmholtz Zentrum München · DELudwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosome biogenesis is a process required for cellular growth and proliferation. Processing of ribosomal RNA (rRNA) is highly sensitive to flavopiridol, a specific inhibitor of cyclin-dependent kinase 9 (Cdk9). Cdk9 has been characterized as the catalytic subunit of the positive transcription elongation factor b (P-TEFb) of RNA polymerase II (RNAPII). Here we studied the connection between RNAPII transcription and rRNA processing. We show that inhibition of RNAPII activity by α-amanitin specifically blocks processing of rRNA. The block is characterized by accumulation of 3' extended unprocessed 47 S rRNAs and the entire inhibition of other 47 S rRNA-specific processing steps. The transcription rate of rRNA is moderately reduced after inhibition of Cdk9, suggesting that defective 3' processing of rRNA negatively feeds back on RNAPI transcription. Knockdown of Cdk9 caused a strong reduction of the levels of RNAPII-transcribed U8 small nucleolar RNA, which is essential for 3' rRNA processing in mammalian cells. Our data demonstrate a pivotal role of Cdk9 activity for coupling of RNAPII transcription with small nucleolar RNA production and rRNA processing.

Indexed as

RNA Processing, Post-TranscriptionalTranscription, GeneticAnimalsCell Line, TumorCell NucleolusCyclin-Dependent Kinase 9DEAD-box RNA HelicasesFeedback, PhysiologicalFlavonoidsGene Knockdown TechniquesHumansMiceMice, KnockoutPiperidinesRibonuclease IIIRNA 3' End ProcessingalvocidibCDK9 protein, humanCyclin-Dependent Kinase 9DEAD-box RNA HelicasesDicer1 protein, mouseFlavonoidsPiperidinesRibonuclease IIIRNA Polymerase IIRNA, RibosomalRNA, Small NucleolarCDK (Cyclin-dependent Kinase)FlavopiridolRibosomal RNA ProcessingRNA Polymerase IRNA Polymerase IISmall Nucleolar RNA (snoRNA)

Identifiers

PMID23744076
PMCPMC3774383
OpenAlexW1979604444

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.