Evidence map›Paper›PMID 23740998›Full record

ArticleJournal of virology2013

A novel hepacivirus with an unusually long and intrinsically disordered NS5A protein in a wild Old World primate.

Michael Lauck, Samuel D Sibley, James Lara, Michael A Purdy, Yury Khudyakov, David Hyeroba, Alex Tumukunde, Geoffrey Weny, William M Switzer, Colin A Chapman and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
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  8. Article
  9. Viruses in sanctuary chimpanzees across Africa.American journal of primatology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. The Bank Vole (Viruses · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Animal Models Used in Hepatitis C Virus Research.International journal of molecular sciences · 2020
    Review
  20. Animal Models of Hepatitis C Virus Infection.Cold Spring Harbor perspectives in medicine · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Michael LauckDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Samuel D Sibley
James Lara
Michael A Purdy
Yury Khudyakov
David Hyeroba
Alex Tumukunde
Geoffrey Weny
William M Switzer
Colin A Chapman
Austin L Hughes
Thomas C Friedrich
David H O'Connor
Tony L Goldberg
University of Wisconsin–Madison · USMakerere University · UGCenters for Disease Control and Prevention · USNational Center for HIV/AIDS Viral Hepatitis STD and TB Prevention · USMcGill University · CAUniversity of South Carolina · US

Funding

WNPRC Supplemental Request for Nonhuman Primate Enclosures to Equip HIV/AIDS-Related Research FacilitiesP51OD011106 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Dorota A. Grejner-Brzezinska · 2012 to 2026
$150.7M
ZOLEDRONATE PREVENTS BONE LOSS IN OVARIECTOMIZED RHESUS MONKEYSP51RR000167 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI WATKINS, DAVID I · 1985 to 2011
$106.7M
Biological and Human Dimensions of Primate Retroviral TransmissionR01AI098420 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI GOLDBERG, TONY L. · 2011 to 2015
$2.3M
The Impact and Society Ecology of Bacterial Zoonoses in Northern Tanzania: UnderR01TW009237 · FIC · DUKE UNIVERSITY · PI CRUMP, JOHN ANDREW · 2011 to 2014
$1.7M
FIC NIH HHS R01 TW009237FIC NIH HHS TW009237NCRR NIH HHS P51 RR000167NIAID NIH HHS R01 AI098420NIH HHS P51 OD011106
6 · The paper itself

Abstract

GB virus B (GBV-B; family Flaviviridae, genus Hepacivirus) has been studied in New World primates as a model for human hepatitis C virus infection, but the distribution of GBV-B and its relatives in nature has remained obscure. Here, we report the discovery of a novel and highly divergent GBV-B-like virus in an Old World monkey, the black-and-white colobus (Colobus guereza), in Uganda. The new virus, guereza hepacivirus (GHV), clusters phylogenetically with GBV-B and recently described hepaciviruses infecting African bats and North American rodents, and it shows evidence of ancient recombination with these other hepaciviruses. Direct sequencing of reverse-transcribed RNA from blood plasma from three of nine colobus monkeys yielded near-complete GHV genomes, comprising two distinct viral variants. The viruses contain an exceptionally long nonstructural 5A (NS5A) gene, approximately half of which codes for a protein with no discernible homology to known proteins. Computational structure-based analyses indicate that the amino terminus of the GHV NS5A protein may serve a zinc-binding function, similar to the NS5A of other viruses within the family Flaviviridae. However, the 521-amino-acid carboxy terminus is intrinsically disordered, reflecting an unusual degree of structural plasticity and polyfunctionality. These findings shed new light on the natural history and evolution of the hepaciviruses and on the extent of structural variation within the Flaviviridae.

Indexed as

AnimalsCluster AnalysisColobusComputer SimulationGB virus BGenome, ViralHepatitis CModels, MolecularMolecular Sequence DataPhylogenyPrimate DiseasesProtein ConformationRNA-Dependent RNA PolymeraseRNA, ViralSequence Analysis, DNAUgandaNS-5 protein, hepatitis C virusRNA-Dependent RNA PolymeraseRNA, ViralViral Nonstructural Proteins

Identifiers

PMID23740998
PMCPMC3754081
OpenAlexW2166433355

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.