Evidence map›Paper›PMID 23740937›Full record

SynthesisHuman molecular genetics2013

A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.

Jose-Ezequiel Martin, Shervin Assassi, Lina-Marcela Diaz-Gallo, Jasper C Broen, Carmen P Simeon, Ivan Castellvi, Esther Vicente-Rabaneda, Vicente Fonollosa, Norberto Ortego-Centeno, Miguel A González-Gay and 37 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 7 pooled it
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 7 syntheses or guidelines pooled it, 106 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Genome-wide meta-analysis reveals shared newAnnals of the rheumatic diseases · 2019
    Pooled it
  5. Pooled it
  6. Pooled it
  7. Pooled it
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Molecular Mechanisms of Neutrophil Extracellular Trap (NETs) Degradation.International journal of molecular sciences · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. The Immunogenetics of Systemic Sclerosis.Advances in experimental medicine and biology · 2022
    Article
  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors at 20 institutions in 7 countries.

Jose-Ezequiel MartinThese authors contributed equally to this work.
Shervin Assassi
Lina-Marcela Diaz-Gallo
Jasper C Broen
Carmen P Simeon
Ivan Castellvi
Esther Vicente-Rabaneda
Vicente Fonollosa
Norberto Ortego-Centeno
Miguel A González-Gay
Gerard Espinosa
Patricia Carreira
Spanish Scleroderma Group
SLEGEN consortium
U.S. Scleroderma GWAS group
BIOLUPUS
Mayte Camps
Jose M Sabio
Sandra D'alfonso
Madelon C Vonk
Alexandre E Voskuyl
Annemie J Schuerwegh
Alexander Kreuter
Torsten Witte
Gabriella Riemekasten
Nicolas Hunzelmann
Paolo Airo
Lorenzo Beretta
Raffaella Scorza
Claudio Lunardi
Jacob Van Laar
Meng May Chee
Jane Worthington
Arianne Herrick
Christopher Denton
Carmen Fonseca
Filemon K Tan
Frank Arnett
Xiaodong Zhou
John D Reveille
Olga Gorlova
Bobby P C Koeleman
Timothy R D J Radstake
Timothy Vyse
Maureen D Mayes
Marta E Alarcón-Riquelme
Javier Martin
The University of Texas Health Science Center at Houston · USInstituto de Parasitología y Biomedicina "López - Neyra" · ESFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITHospital Virgen del Valle · ESUniversity of Manchester · GBAmsterdam UMC Location VUmc · NLAzienda Socio Sanitaria Territoriale degli Spedali Civili di Brescia · ITCenter for Rheumatology · USCharité - Universitätsmedizin Berlin · DEComplejo Hospitalario Universitario de Granada · ESFundación Marques de Valdecilla · ESGlasgow Royal Infirmary · GBHospital Clínic de Barcelona · ESHospital Clínico San Carlos · ESHospital de Sant Pau · ESHospital Universitario de La Princesa · ESHospital Universitario Virgen de las Nieves · ESInstitute of Immunology · HRKing's College London · GBLeiden University · NL

Funding

Center for Clinical and Translational Sciences (CCTS)UL1TR000371 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2012 to 2016
$13.4M
HLA GENE COMPLEMENTATION IN PRIMARY SJOGREN'S AND LUPUSR01AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI KOTTYAN, LEAH CLAIRE, WEIRAUCH, MATTHEW TYSON · 1987 to 2025
$7.8M
Role of TGF-beta and CTGF Signaling Transgenic Mouse Models of SclerodermaP50AR054144 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI TAN, FILEMON K. · 2006 to 2010
$7.7M
Two-Stage Genome-Wide Association Study in Systemic SclerosisR01AR055258 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MAYES, MAUREEN MAUREEN · 2008 to 2012
$5.9M
Genetic Linkage in LupusR37AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN BARKER · 2005 to 2014
$4.2M
Studies of HLA Region Genomics in Systemic Sclerosis and Ankylosing SpondyilitisU01AI090909 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MAYES, MAUREEN MAUREEN, REVEILLE, JOHN DUFFIN · 2010 to 2014
$2.9M
SCLERODERMA FAMILY REGISTRY AND DNA REPOSITORY-264002251-264002251-264002251N01AR002251 · NIAMS · WAYNE STATE UNIVERSITY · PI MAYES, MAUREEN · 2000 to 2006
$659k
Molecular Markers for Progression of Pulmonary Fibrosis in Systemic SclerosisK23AR061436 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ASSASSI, SHERVIN · 2011 to 2014
$494k
Arthritis Research UK 17552NCATS NIH HHS UL1 TR000371NIAID NIH HHS 1U01AI09090-01NIAID NIH HHS R01 AI024717NIAID NIH HHS R37 AI024717NIAID NIH HHS U01 AI090909NIAMS NIH HHS 1P50AR054144NIAMS NIH HHS K23 AR061436NIAMS NIH HHS K23-AR-061436NIAMS NIH HHS N01-AR-0-2251NIAMS NIH HHS P50 AR054144NIAMS NIH HHS R01 AR055258NIAMS NIH HHS R01-AR055258
6 · The paper itself

Abstract

Systemic sclerosis (SSc) and systemic lupus erythematosus (SLE) are two archetypal systemic autoimmune diseases which have been shown to share multiple genetic susceptibility loci. In order to gain insight into the genetic basis of these diseases, we performed a pan-meta-analysis of two genome-wide association studies (GWASs) together with a replication stage including additional SSc and SLE cohorts. This increased the sample size to a total of 21,109 (6835 cases and 14,274 controls). We selected for replication 19 SNPs from the GWAS data. We were able to validate KIAA0319L (P = 3.31 × 10(-11), OR = 1.49) as novel susceptibility loci for SSc and SLE. Furthermore, we also determined that the previously described SLE susceptibility loci PXK (P = 3.27 × 10(-11), OR = 1.20) and JAZF1 (P = 1.11 × 10(-8), OR = 1.13) are shared with SSc. Supporting these new discoveries, we observed that KIAA0319L was overexpressed in peripheral blood cells of SSc and SLE patients compared with healthy controls. With these, we add three (KIAA0319L, PXK and JAZF1) and one (KIAA0319L) new susceptibility loci for SSc and SLE, respectively, increasing significantly the knowledge of the genetic basis of autoimmunity.

Indexed as

Genetic Predisposition to DiseaseCase-Control StudiesCo-Repressor ProteinsDNA-Binding ProteinsGenetic LociGenetic VariationGenome-Wide Association StudyHumansIntracellular Signaling Peptides and ProteinsLupus Erythematosus, SystemicNeoplasm ProteinsNerve Tissue ProteinsNuclear ProteinsPolymorphism, Single NucleotideProtein Serine-Threonine KinasesReceptors, Cell SurfaceCo-Repressor ProteinsDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsJAZF1 protein, humanKIAA0319L protein, humanNeoplasm ProteinsNerve Tissue ProteinsNuclear ProteinsProtein Serine-Threonine KinasesPXK protein, humanReceptors, Cell Surface

Identifiers

PMID23740937
PMCPMC3766185
OpenAlexW2102690320

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.