Evidence map›Paper›PMID 23739051›Full record

ArticleThe ISME journal2013

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust.

Lara Rajeev, Ulisses Nunes da Rocha, Niels Klitgord, Eric G Luning, Julian Fortney, Seth D Axen, Patrick M Shih, Nicholas J Bouskill, Benjamin P Bowen, Cheryl A Kerfeld and 4 more

Abstract read
In one paragraph

Article in The ISME journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed.

  1. Article
  2. Article
  3. Nocturnal hydration prepares desert cyanobacteria for dawn-light harvesting by inducing phycoerythrin synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Distinct responses of Scytonema hyalinum and Leptolyngbya sp. to water availability and biocrust formation.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  17. Molecular Mechanisms ofPlants (Basel, Switzerland) · 2025
    Review
  18. Red-light signaling pathway activates desert cyanobacteria to prepare for desiccation tolerance.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  19. Article
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Lara RajeevPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Ulisses Nunes da Rocha
Niels Klitgord
Eric G Luning
Julian Fortney
Seth D Axen
Patrick M Shih
Nicholas J Bouskill
Benjamin P Bowen
Cheryl A Kerfeld
Ferran Garcia-Pichel
Eoin L Brodie
Trent R Northen
Aindrila Mukhopadhyay

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biological soil crusts (BSCs) cover extensive portions of the earth's deserts. In order to survive desiccation cycles and utilize short periods of activity during infrequent precipitation, crust microorganisms must rely on the unique capabilities of vegetative cells to enter a dormant state and be poised for rapid resuscitation upon wetting. To elucidate the key events involved in the exit from dormancy, we performed a wetting experiment of a BSC and followed the response of the dominant cyanobacterium, Microcoleus vaginatus, in situ using a whole-genome transcriptional time course that included two diel cycles. Immediate, but transient, induction of DNA repair and regulatory genes signaled the hydration event. Recovery of photosynthesis occurred within 1 h, accompanied by upregulation of anabolic pathways. Onset of desiccation was characterized by the induction of genes for oxidative and photo-oxidative stress responses, osmotic stress response and the synthesis of C and N storage polymers. Early expression of genes for the production of exopolysaccharides, additional storage molecules and genes for membrane unsaturation occurred before drying and hints at preparedness for desiccation. We also observed signatures of preparation for future precipitation, notably the expression of genes for anaplerotic reactions in drying crusts, and the stable maintenance of mRNA through dormancy. These data shed light on possible synchronization between this cyanobacterium and its environment, and provides key mechanistic insights into its metabolism in situ that may be used to predict its response to climate, and or, land-use driven perturbations.

Indexed as

Desert ClimateSoil MicrobiologyCyanobacteriaDehydrationGene Expression ProfilingGene Expression Regulation, BacterialGenome, BacterialLightPhotosynthesisSoilStress, PhysiologicalTime FactorsWaterSoilWater

Identifiers

PMID23739051
PMCPMC3806265

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.