Evidence map›Paper›PMID 23738863›Full record

ArticleMolecular plant pathology2013

Transcriptomic characterization of two major Fusarium resistance quantitative trait loci (QTLs), Fhb1 and Qfhs.ifa-5A, identifies novel candidate genes.

Wolfgang Schweiger, Barbara Steiner, Christian Ametz, Gerald Siegwart, Gerlinde Wiesenberger, Franz Berthiller, Marc Lemmens, Haiyan Jia, Gerhard Adam, Gary J Muehlbauer and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular plant pathology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
18.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 128 citations in OpenAlex.

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  13. Identification and Expressional Analysis of siRNAs Responsive toInternational journal of molecular sciences · 2023
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  19. Linking Multi-Omics to Wheat Resistance Types toInternational journal of molecular sciences · 2022
    Review
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 3 countries.

Wolfgang SchweigerInstitute for Biotechnology in Plant Production, University of Natural Resources and Life Sciences, Konrad Lorenz Straße 20, 3430 Tulln, Austria. wolfgang.schweiger@boku.ac.at
Barbara Steiner
Christian Ametz
Gerald Siegwart
Gerlinde Wiesenberger
Franz Berthiller
Marc Lemmens
Haiyan Jia
Gerhard Adam
Gary J Muehlbauer
David P Kreil
Hermann Buerstmayr
BOKU University · ATUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusarium head blight, caused by Fusarium graminearum, is a devastating disease of wheat. We developed near-isogenic lines (NILs) differing in the two strongest known F. graminearum resistance quantitative trait loci (QTLs), Qfhs.ndsu-3BS (also known as resistance gene Fhb1) and Qfhs.ifa-5A, which are located on the short arm of chromosome 3B and on chromosome 5A, respectively. These NILs showing different levels of resistance were used to identify transcripts that are changed significantly in a QTL-specific manner in response to the pathogen and between mock-inoculated samples. After inoculation with F. graminearum spores, 16 transcripts showed a significantly different response for Fhb1 and 352 for Qfhs.ifa-5A. Notably, we identified a lipid transfer protein which is constitutively at least 50-fold more abundant in plants carrying the resistant allele of Qfhs.ifa-5A. In addition to this candidate gene associated with Qfhs.ifa-5A, we identified a uridine diphosphate (UDP)-glycosyltransferase gene, designated TaUGT12887, exhibiting a positive difference in response to the pathogen in lines harbouring both QTLs relative to lines carrying only the Qfhs.ifa-5A resistance allele, suggesting Fhb1 dependence of this transcript. Yet, this dependence was observed only in the NIL with already higher basal resistance. The complete cDNA of TaUGT12887 was reconstituted from available wheat genomic sequences, and a synthetic recoded gene was expressed in a toxin-sensitive strain of Saccharomyces cerevisiae. This gene conferred deoxynivalenol resistance, albeit much weaker than that observed with the previously characterized barley HvUGT13248.

Indexed as

Genetic Association StudiesCarrier ProteinsDisease ResistanceFusariumGene Expression Regulation, PlantGenes, PlantPhysical Chromosome MappingPlant DiseasesQuantitative Trait LociRNA, MessengerTranscription, GeneticTranscriptomeTrichothecenesTriticumCarrier Proteinsdeoxynivalenollipid transfer proteinRNA, MessengerTrichothecenes

Identifiers

PMID23738863
PMCPMC3902993
OpenAlexW1590206291

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.