ArticlePloS one2013
Complete sequence and analysis of plastid genomes of two economically important red algae: Pyropia haitanensis and Pyropia yezoensis.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Innovative data augmentation strategy for deep learning on biological datasets with limited gene representations focused on chloroplast genomes.Scientific reports · 2025Article
- Characterization and organelle genome sequencing of Pyropia species from Myanmar.Scientific reports · 2023Article
- Membrane Fluidization Governs the Coordinated Heat-Inducible Expression of Nucleus- and Plastid Genome-EncodedPlants (Basel, Switzerland) · 2023Article
- ChIP-Based Nuclear DNA Isolation for Genome Sequencing inPlants (Basel, Switzerland) · 2023Article
- Comparison ofLife (Basel, Switzerland) · 2022Article
- Article
- The Complete Plastid Genomes of Seven Sargassaceae Species and Their Phylogenetic Analysis.Frontiers in plant science · 2021Article
- Health Functionality and Quality Control of Laver (Marine drugs · 2019Review
- Mycoheterotrophic Epirixanthes (Polygalaceae) has a typical angiosperm mitogenome but unorthodox plastid genomes.Annals of botany · 2019Article
- The first plastid genome of a filamentous taxon 'Bangia' sp. OUCPT-01 in the Bangiales.Scientific reports · 2018Article
- Origin and evolutionary history of freshwater Rhodophyta: further insights based on phylogenomic evidence.Scientific reports · 2017Article
- Construction of Plastid Expression Vector and Development of Genetic Transformation System for the Seaweed Pyropia yezoensis.Marine biotechnology (New York, N.Y.) · 2017Article
- Complete chloroplast genome of Gracilaria firma (Gracilariaceae, Rhodophyta), with discussion on the use of chloroplast phylogenomics in the subclass Rhodymeniophycidae.BMC genomics · 2017Article
- Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants.BMC biology · 2016Article
- Reconstructing the complex evolutionary history of mobile plasmids in red algal genomes.Scientific reports · 2016Article
- Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology.BMC genomics · 2015Article
- A Database of Plastid Protein Families from Red Algae and Apicomplexa and Expression Regulation of the moeB Gene.BioMed research international · 2015Article
- Complete Plastid Genome of the Brown Alga Costaria costata (Laminariales, Phaeophyceae).PloS one · 2015Article
- Article
- Phycobilisome Mobility and Its Role in the Regulation of Light Harvesting in Red Algae.Plant physiology · 2014Article
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11 authors.
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Abstract
backgroundPyropia haitanensis and P. yezoensis are two economically important marine crops that are also considered to be research models to study the physiological ecology of intertidal seaweed communities, evolutionary biology of plastids, and the origins of sexual reproduction. This plastid genome information will facilitate study of breeding, population genetics and phylogenetics. PRINCIPAL
findingsWe have fully sequenced using next-generation sequencing the circular plastid genomes of P. hatanensis (195,597 bp) and P. yezoensis (191,975 bp), the largest of all the plastid genomes of the red lineage sequenced to date. Organization and gene contents of the two plastids were similar, with 211-213 protein-coding genes (including 29-31 unknown-function ORFs), 37 tRNA genes, and 6 ribosomal RNA genes, suggesting a largest coding capacity in the red lineage. In each genome, 14 protein genes overlapped and no interrupted genes were found, indicating a high degree of genomic condensation. Pyropia maintain an ancient gene content and conserved gene clusters in their plastid genomes, containing nearly complete repertoires of the plastid genes known in photosynthetic eukaryotes. Similarity analysis based on the whole plastid genome sequences showed the distance between P. haitanensis and P. yezoensis (0.146) was much smaller than that of Porphyra purpurea and P. haitanensis (0.250), and P. yezoensis (0.251); this supports re-grouping the two species in a resurrected genus Pyropia while maintaining P. purpurea in genus Porphyra. Phylogenetic analysis supports a sister relationship between Bangiophyceae and Florideophyceae, though precise phylogenetic relationships between multicellular red alage and chromists were not fully resolved.
conclusionsThese results indicate that Pyropia have compact plastid genomes. Large coding capacity and long intergenic regions contribute to the size of the largest plastid genomes reported for the red lineage. Possessing the largest coding capacity and ancient gene content yet found reveal that Pyropia are more primitive multicellular red algae.
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