Evidence map›Paper›PMID 23733951›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance.

Marcelo Kern, John E McGeehan, Simon D Streeter, Richard N A Martin, Katrin Besser, Luisa Elias, Will Eborall, Graham P Malyon, Christina M Payne, Michael E Himmel and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 104 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Marcelo KernCentre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, United Kingdom.
John E McGeehan
Simon D Streeter
Richard N A Martin
Katrin Besser
Luisa Elias
Will Eborall
Graham P Malyon
Christina M Payne
Michael E Himmel
Kirk Schnorr
Gregg T Beckham
Simon M Cragg
Neil C Bruce
Simon J McQueen-Mason
University of York · GBUniversity of Portsmouth · GBNational Renewable Energy Laboratory · USNovozymes (Denmark) · DKUniversity of Kentucky · US

Funding

Biotechnology and Biological Sciences Research Council BB/G016178/1Biotechnology and Biological Sciences Research Council BB/G016208/1Biotechnology and Biological Sciences Research Council BB/H531543/1
6 · The paper itself

Abstract

Nature uses a diversity of glycoside hydrolase (GH) enzymes to convert polysaccharides to sugars. As lignocellulosic biomass deconstruction for biofuel production remains costly, natural GH diversity offers a starting point for developing industrial enzymes, and fungal GH family 7 (GH7) cellobiohydrolases, in particular, provide significant hydrolytic potential in industrial mixtures. Recently, GH7 enzymes have been found in other kingdoms of life besides fungi, including in animals and protists. Here, we describe the in vivo spatial expression distribution, properties, and structure of a unique endogenous GH7 cellulase from an animal, the marine wood borer Limnoria quadripunctata (LqCel7B). RT-quantitative PCR and Western blot studies show that LqCel7B is expressed in the hepatopancreas and secreted into the gut for wood degradation. We produced recombinant LqCel7B, with which we demonstrate that LqCel7B is a cellobiohydrolase and obtained four high-resolution crystal structures. Based on a crystallographic and computational comparison of LqCel7B to the well-characterized Hypocrea jecorina GH7 cellobiohydrolase, LqCel7B exhibits an extended substrate-binding motif at the tunnel entrance, which may aid in substrate acquisition and processivity. Interestingly, LqCel7B exhibits striking surface charges relative to fungal GH7 enzymes, which likely results from evolution in marine environments. We demonstrate that LqCel7B stability and activity remain unchanged, or increase at high salt concentration, and that the L. quadripunctata GH mixture generally contains cellulolytic enzymes with highly acidic surface charge compared with enzymes derived from terrestrial microbes. Overall, this study suggests that marine cellulases offer significant potential for utilization in high-solids industrial biomass conversion processes.

Indexed as

AnimalsBiofuelsBiomassCellulaseCellulose 1,4-beta-CellobiosidaseCrustaceaCrystallography, X-RayDigestive SystemEnzyme ActivationHypocreaMolecular Sequence DataProtein Structure, TertiarySalt ToleranceSeawaterStructure-Activity RelationshipSubstrate SpecificityBiofuelsCellulaseCellulose 1,4-beta-Cellobiosidasecarbohydrate degrading enzymesgribble

Identifiers

PMID23733951
PMCPMC3690837
OpenAlexW2072799506

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.