Evidence map›Paper›PMID 23733949›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story.

Maija K Pietilä, Pasi Laurinmäki, Daniel A Russell, Ching-Chung Ko, Deborah Jacobs-Sera, Roger W Hendrix, Dennis H Bamford, Sarah J Butcher

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The Structural Diversity of Encapsulin Protein Shells.Chembiochem : a European journal of chemical biology · 2024
    Review
  8. Review
  9. Maturation of Viruses.Sub-cellular biochemistry · 2024
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Predicting the capsid architecture of phages from metagenomic data.Computational and structural biotechnology journal · 2022
    Article
  18. Review
  19. Article
  20. High Resolution Structure of the Mature Capsid ofInternational journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Maija K PietiläDepartment of Biosciences and Institute of Biotechnology, University of Helsinki, FI-00014, Helsinki, Finland.
Pasi Laurinmäki
Daniel A Russell
Ching-Chung Ko
Deborah Jacobs-Sera
Roger W Hendrix
Dennis H Bamford
Sarah J Butcher
University of Pittsburgh · USUniversity of Helsinki · FIHelsinki Institute of Physics · FI

Funding

ASSEMBLY AND STRUCTURE OF BACTERIOPHAGE LAMBDAR01GM047795 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DUDA, ROBERT LOUIS · 1991 to 2017
$7.8M
GENOMIC ANALYSIS OF LAMBDOID, TB &OTHER BACTERIOPHAGESR01GM051975 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HENDRIX, ROGER W · 1995 to 2007
$2.4M
Howard Hughes Medical InstituteNIGMS NIH HHS GM51975NIGMS NIH HHS R01 GM047795NIGMS NIH HHS R01 GM051975NIGMS NIH HHS R01GM47795
6 · The paper itself

Abstract

It has been proposed that viruses can be divided into a small number of structure-based viral lineages. One of these lineages is exemplified by bacterial virus Hong Kong 97 (HK97), which represents the head-tailed dsDNA bacteriophages. Seemingly similar viruses also infect archaea. Here we demonstrate using genomic analysis, electron cryomicroscopy, and image reconstruction that the major coat protein fold of newly isolated archaeal Haloarcula sinaiiensis tailed virus 1 has the canonical coat protein fold of HK97. Although it has been anticipated previously, this is physical evidence that bacterial and archaeal head-tailed viruses share a common architectural principle. The HK97-like fold has previously been recognized also in herpesviruses, and this study expands the HK97-like lineage to viruses from all three domains of life. This is only the second established lineage to include archaeal, bacterial, and eukaryotic viruses. Thus, our findings support the hypothesis that the last common universal ancestor of cellular organisms was infected by a number of different viruses.

Indexed as

Archaeal VirusesCapsidCapsid ProteinsComputer SimulationCryoelectron MicroscopyGenome, ViralHaloarculaImaging, Three-DimensionalModels, MolecularMolecular Sequence DataProtein FoldingCapsid Proteinsarchaeal virusmajor capsid protein foldvirus evolution

Identifiers

PMID23733949
PMCPMC3696780
OpenAlexW2052425932

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.