Evidence map›Paper›PMID 23733889›Full record

ArticleG3 (Bethesda, Md.)2013

The genetic architecture of methotrexate toxicity is similar in Drosophila melanogaster and humans.

Galina Kislukhin, Elizabeth G King, Kelli N Walters, Stuart J Macdonald, Anthony D Long

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Genetic dissection of innate immune memory inFrontiers in immunology · 2022
    Article
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  6. Article
  7. Article
  8. Article
  9. A Genomic Reference Panel forG3 (Bethesda, Md.) · 2018
    Article
  10. Review
  11. Article
  12. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Galina KislukhinDepartment of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, California 92697-2525, USA.
Elizabeth G King
Kelli N Walters
Stuart J Macdonald
Anthony D Long
University of California, Irvine · USUniversity of Kansas · US

Funding

A resource for the genetic analysis of complex traitsR01RR024862 · NCRR · UNIVERSITY OF KANSAS LAWRENCE · PI MACDONALD, STUART JOHN · 2008 to 2011
$2.5M
Drosophila as a model for chemotherapy pharmacogenomicsR01GM085251 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LONG, ANTHONY DOUGLAS · 2009 to 2012
$1.3M
The genetics of the Drosophila IIS pathway response to changing nutritionF32GM099382 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI KING, ELIZABETH GRIEP · 2012 to 2013
$90k
NCRR NIH HHS R01 RR024862NIGMS NIH HHS F32 GM099382NIGMS NIH HHS R01 GM085251
6 · The paper itself

Abstract

The severity of the toxic side effects of chemotherapy varies among patients, and much of this variation is likely genetically based. Here, we use the model system Drosophila melanogaster to genetically dissect the toxicity of methotrexate (MTX), a drug used primarily to treat childhood acute lymphoblastic leukemia and rheumatoid arthritis. We use the Drosophila Synthetic Population Resource, a panel of recombinant inbred lines derived from a multiparent advanced intercross, and quantify MTX toxicity as a reduction in female fecundity. We identify three quantitative trait loci (QTL) affecting MTX toxicity; two colocalize with the fly orthologs of human genes believed to mediate MTX toxicity and one is a novel MTX toxicity gene with a human ortholog. A fourth suggestive QTL spans a centromere. Local single-marker association scans of candidate gene exons fail to implicate amino acid variants as the causative single-nucleotide polymorphisms, and we therefore hypothesize the causative variation is regulatory. In addition, the effects at our mapped QTL do not conform to a simple biallelic pattern, suggesting multiple causative factors underlie the QTL mapping results. Consistent with this observation, no single single-nucleotide polymorphism located in or near a candidate gene can explain the QTL mapping signal. Overall, our results validate D. melanogaster as a model for uncovering the genetic basis of chemotoxicity and suggest the genetic basis of MTX toxicity is due to a handful of genes each harboring multiple segregating regulatory factors.

Indexed as

AnimalsCentromereChromosome MappingDNA Transposable ElementsDrosophila melanogasterDrosophila ProteinsFemaleFertilityGlutathione PeroxidaseHumansMethotrexateModels, GeneticPhenotypePolymorphism, Single NucleotideQuantitative Trait LociDNA Transposable ElementsDrosophila ProteinsGlutathione PeroxidaseMethotrexatechemotoxicityDrosophila synthetic population resourcemethotrexatepharmacogenomicsquantitative trait loci

Identifiers

PMID23733889
PMCPMC3737169
OpenAlexW2152835929

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.