Evidence map›Paper›PMID 23733345›Full record

ArticleThe Journal of cell biology2013

Long-range heterochromatin association is mediated by silencing and double-strand DNA break repair proteins.

Jacob G Kirkland, Rohinton T Kamakaka

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Measuring the buffering capacity of gene silencing inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Cohesion promotes nucleolar structure and function.Molecular biology of the cell · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jacob G KirklandDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
Rohinton T Kamakaka
University of California, Santa Cruz · US

Funding

Training Program/Molecular/Cell/Developmental BiologyT32GM008646 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STROME, SUSAN · 1999 to 2018
$3.7M
Chromatin Domain DynamicsR01GM078068 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KAMAKAKA, ROHINTON T. · 2007 to 2018
$3.7M
NIGMS NIH HHS GM078068NIGMS NIH HHS R01 GM078068NIGMS NIH HHS T32 GM008646NIGMS NIH HHS T32-GM008646
6 · The paper itself

Abstract

The eukaryotic genome is highly organized in the nucleus, and this organization affects various nuclear processes. However, the molecular details of higher-order organization of chromatin remain obscure. In the present study, we show that the Saccharomyces cerevisiae silenced loci HML and HMR cluster in three-dimensional space throughout the cell cycle and independently of the telomeres. Long-range HML-HMR interactions require the homologous recombination (HR) repair pathway and phosphorylated H2A (γ-H2A). γ-H2A is constitutively present at silenced loci in unperturbed cells, its localization requires heterochromatin, and it is restricted to the silenced domain by the transfer DNA boundary element. SMC proteins and Scc2 localize to the silenced domain, and Scc2 binding requires the presence of γ-H2A. These findings illustrate a novel pathway for heterochromatin organization and suggest a role for HR repair proteins in genomic organization.

Indexed as

Cell NucleusChromosomes, FungalDNA BreaksDNA RepairGene SilencingGenes, Mating Type, FungalHeterochromatinHistonesHSP70 Heat-Shock ProteinsMitochondrial ProteinsPhosphorylationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTelomereHeterochromatinHistonesHSP70 Heat-Shock ProteinsMitochondrial ProteinsSaccharomyces cerevisiae ProteinsSSQ1 protein, S cerevisiae

Identifiers

PMID23733345
PMCPMC3678155
OpenAlexW2159860718

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.