Evidence map›Paper›PMID 23733259›Full record

ArticleJournal of the American Society for Mass Spectrometry2013

Effects of metal ion adduction on the gas-phase conformations of protein ions.

Tawnya G Flick, Samuel I Merenbloom, Evan R Williams

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Tawnya G FlickDepartment of Chemistry, University of California, Berkeley, CA, 94720-1460, USA.
Samuel I Merenbloom
Evan R Williams
University of California, Berkeley · USAmgen (United States) · US

Funding

Development of Single Particle Analyzer of Mass and Mobility (SPAMM)R01GM096097 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI WILLIAMS, EVAN R · 2011 to 2014
$1.1M
Ion Mobility Spectrometry-Tandem Mass Spectrometry for Conformer Selective StructF32GM093593 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MERENBLOOM, SAMUEL ISIAH · 2010 to 2012
$146k
NIGMS NIH HHS 5F32GM093593-02NIGMS NIH HHS F32 GM093593NIGMS NIH HHS R01 GM096097NIGMS NIH HHS R01GM096097
6 · The paper itself

Abstract

Changes in protein ion conformation as a result of nonspecific adduction of metal ions to the protein during electrospray ionization (ESI) from aqueous solutions were investigated using traveling wave ion mobility spectrometry (TWIMS). For all proteins examined, protein cations (and in most cases anions) with nonspecific metal ion adducts are more compact than the fully protonated (or deprotonated) ions with the same charge state. Compaction of protein cations upon nonspecific metal ion binding is most significant for intermediate charge state ions, and there is a greater reduction in collisional cross section with increasing number of metal ion adducts and increasing ion valency, consistent with an electrostatic interaction between the ions and the protein. Protein cations with the greatest number of adducted metal ions are no more compact than the lowest protonated ions formed from aqueous solutions. These results show that smaller collisional cross sections for metal-attached protein ions are not a good indicator of a specific metal-protein interaction in solution because nonspecific metal ion adduction also results in smaller gaseous protein cation cross sections. In contrast, the collisional cross section of α-lactalbumin, which specifically binds one Ca(2+), is larger for the holo-form compared with the apo-form, in agreement with solution-phase measurements. Because compaction of protein cations occurs when metal ion adduction is nonspecific, elongation of a protein cation may be a more reliable indicator that a specific metal ion-protein interaction occurs in solution.

Indexed as

Protein ConformationCations, DivalentCytochromes cGasesIonsLactalbuminMetalsProteinsSolutionsSpectrometry, Mass, Electrospray IonizationUbiquitinCations, DivalentCytochromes cGasesIonsLactalbuminMetalsProteinsSolutionsUbiquitin

Identifiers

PMID23733259
PMCPMC3795793
OpenAlexW2027681051

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.