Evidence map›Paper›PMID 23733186›Full record

ArticleThe Journal of biological chemistry2013

Protein signatures that promote operator selectivity among paralog MerR monovalent metal ion regulators.

María V Humbert, Rodolfo M Rasia, Susana K Checa, Fernando C Soncini

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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  6. Article
  7. Compartment and signal-specific codependence in the transcriptional control of Salmonella periplasmic copper homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

María V HumbertInstituto de Biología Molecular y Celular de Rosario (IBR, CONICET-UNR), Universidad Nacional de Rosario, Consejo Nacional de Investigaciones Científicas y Técnicas, Ocampo y Esmeralda, 2000-Rosario, Argentina.
Rodolfo M Rasia
Susana K Checa
Fernando C Soncini
Consejo Nacional de Investigaciones Científicas y Técnicas · ARInstituto de Biología Molecular y Celular de Rosario · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two paralog transcriptional regulators of the MerR family, CueR and GolS, are responsible for monovalent metal ion sensing and resistance in Salmonella enterica. Although similar in sequence and also in their target binding sites, these proteins differ in signal detection and in the set of target genes they control. Recently, we demonstrated that selective promoter recognition depends on the presence of specific bases located at positions 3' and 3 within the operators they interact with. Here, we identify the amino acid residues within the N-terminal DNA-binding domain of these sensor proteins that are directly involved in operator discrimination. We demonstrate that a methionine residue at position 16 of GolS, absolutely conserved among GolS-like proteins but absent in all CueR-like xenologs, is the key to selectively recognize operators that harbor the distinctive GolS-operator signature, whereas the residue at position 19 finely tunes the regulator/operator interaction. Furthermore, swapping these residues switches the set of genes recognized by these transcription factors. These results indicate that co-evolution of a regulator and its cognate operators within the bacterial cell provides the conditions to avoid cross-recognition and guarantees the proper response to metal injury.

Indexed as

Promoter Regions, GeneticAmino Acid SequenceBacterial ProteinsBase SequenceBinding SitesCations, MonovalentDNA-Binding ProteinsEscherichia coliMetalsMethionineModels, MolecularMutationOligonucleotidesProtein BindingProtein Structure, TertiarySalmonella entericaBacterial ProteinsCations, MonovalentDNA-Binding ProteinsMerR protein, BacteriaMetalsMethionineOligonucleotidesBacterial Signal TransductionCopperDNA OperatorsHelix-Loop-Helix Transcription FactorsMerR RegulatorsMetal HomeostasisMicrobiologyOperator SelectivityProkaryotic Signal TransductionProtein-DNA Interaction

Identifiers

PMID23733186
PMCPMC3711316
OpenAlexW2162771864

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.