Evidence map›Paper›PMID 23733015›Full record

ArticleOncology reports2013

Identification of target genes of PAX3-FOXO1 in alveolar rhabdomyosarcoma.

Eun Hyun Ahn, Gabriela E Mercado, Marick Laé, Marc Ladanyi

Open access · bronzeAbstract read
In one paragraph

Article in Oncology reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Eun Hyun AhnDepartment of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA. ahneun@uw.edu
Gabriela E Mercado
Marick Laé
Marc Ladanyi
Memorial Sloan Kettering Cancer Center · USUniversity of Pennsylvania · US

Funding

Tumor mutation signaturesP01CA077852 · NCI · UNIVERSITY OF WASHINGTON · PI MONNAT, RAYMOND J · 1999 to 2019
$26.0M
Project 5P01CA106450 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI O'REILLY, RICHARD JOHN · 2005 to 2009
$12.4M
T(2--13) OF ALVEOLAR RHABDOMYOSARCOMAR01CA064202 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BARR, FREDERIC G · 1994 to 2007
$3.1M
Cancer Molecular Pathology Training ProgramR25CA087812 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BARR, FREDERIC G · 2001 to 2006
$2.1M
COG studies of gene amplification in rhabdomyosarcomaR01CA104896 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BARR, FREDERIC G · 2005 to 2009
$1.8M
NCI NIH HHS CA064202-13NCI NIH HHS CA077852-14NCI NIH HHS CA087812-06NCI NIH HHS CA104896-03NCI NIH HHS CA106450NCI NIH HHS P01 CA077852NCI NIH HHS P01 CA106450NCI NIH HHS R01 CA064202NCI NIH HHS R01 CA104896NCI NIH HHS R25 CA087812
6 · The paper itself

Abstract

Rhabdomyosarcoma (RMS) is a soft tissue sarcoma categorized into two major subtypes: alveolar RMS (ARMS) and embryonal RMS (ERMS). Most ARMS express the PAX3-FOXO1 (P3F) fusion oncoprotein generated by the 2;13 chromosomal translocation. In the present study, the downstream target genes of P3F were identified by analyzing two independent sets of gene expression profiles: primary RMS tumors and RD ERMS cells transduced with inducible P3F constructs. We found 34 potential target genes (27 upregulated and 7 downregulated) that were significantly and differentially expressed between P3F-positive and P3F-negative categories, both in primary RMS tumors and in the inducible P3F cell culture system. Gene ontology analysis of microarray data of the inducible P3F cell culture system employed indicated apoptosis, cell death, development, and signal transduction as overrepresented significant functional categories found in both upregulated and downregulated genes. Therefore, among the 34 potential target genes, the expression of cell death‑related [Gremlin1, cysteine knot superfamily 1, BMP antagonist 1 (GREM1) and death-associated protein kinase 1 (DAPK1)] and development‑related [myogenic differentiation 1 (MYOD1) and hairy/enhancer-of-split related with YRPW motif 1 (HEY1)] genes were further investigated. The differential expression of GREM1, DAPK1, MYOD1 and HEY1 was confirmed in independent tumors and inducible cell culture systems. The expression of GREM1, DAPK1 and MYOD1 were significantly upregulated; HEY1 was significantly downregulated in independent P3F-positive ARMS tumors and transcriptionally active P3F cells, compared to those in ERMS tumors and transcriptionally inactive P3F cells. This study identified target genes of P3F and suggested that four downstream targets (GREM1, DAPK1, MYOD1 and HEY1) can contribute to the biological activities of P3F involved in growth suppression or cell death and myogenic differentiation.

Indexed as

ApoptosisBasic Helix-Loop-Helix ProteinsCell Cycle ProteinsCell DeathCell Line, TumorDeath-Associated Protein KinasesForkhead Box Protein O1Forkhead Transcription FactorsGene Expression Regulation, NeoplasticHumansIntercellular Signaling Peptides and ProteinsMyoD ProteinOncogene ProteinsOncogene Proteins, FusionPaired Box Transcription FactorsPAX3 Transcription FactorBasic Helix-Loop-Helix ProteinsCell Cycle ProteinsDAPK1 protein, humanDeath-Associated Protein KinasesForkhead Box Protein O1Forkhead Transcription FactorsFOXO1 protein, humanGREM1 protein, humanHEY1 protein, humanIntercellular Signaling Peptides and ProteinsMyoD1 myogenic differentiation proteinMyoD ProteinOncogene ProteinsOncogene Proteins, FusionPaired Box Transcription FactorsPAX3-FOXO1A fusion protein, humanPAX3 protein, humanPAX3 Transcription Factor

Identifiers

PMID23733015
PMCPMC3776721
OpenAlexW2001620055

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.