Evidence map›Paper›PMID 23731888›Full record

ArticleBMC genomics2013

Drosophila GAGA factor polyglutamine domains exhibit prion-like behavior.

Muhammad Tariq, Renee Wegrzyn, Saima Anwar, Bernd Bukau, Renato Paro

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Prions: Roles in Development and Adaptive Evolution.Journal of molecular evolution · 2020
    Review
  5. Article
  6. Article
  7. Discovering Putative Prion-Like Proteins inFrontiers in microbiology · 2018
    Article
  8. Histone locus regulation by theGenes & development · 2017
    Article
  9. Review
  10. Amino acid composition predicts prion activity.PLoS computational biology · 2017
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Muhammad TariqDepartment of Biology, SBA School of Science and Engineering, Lahore University of Management Sciences, Lahore 54792, Pakistan. m.tariq@lums.edu.pk
Renee Wegrzyn
Saima Anwar
Bernd Bukau
Renato Paro
Lahore University of Management Sciences · PKUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Drosophila GAGA factor (GAF) participates in nucleosome remodeling to activate genes, acts as an antirepressor and is associated with heterochromatin, contributing to gene repression. GAF functions are intimately associated to chromatin-based epigenetic control, linking basic transcriptional regulation to heritable long-term maintenance of gene expression. These diverse functions require GAF to interact with different partners in different multiprotein complexes. The two isoforms of GAF depict highly conserved glutamine-rich C-terminal domains (Q domain), which have been implicated in complex formation.

resultsHere we show that the Q domains exhibit prion-like properties. In an established yeast test system the two GAF Q domains convey prion activities comparable to well known yeast prions. The Q domains stably maintain two distinct conformational states imposing functional constraints on the fused yeast reporter protein. The prion-like phenotype can be reversibly cured in the presence of guanidine HCl or by over-expression of the Hsp104 chaperone protein. Additionally, when fused to GFP, the Q domains form aggregates in yeast cells.

conclusionWe conclude that prion-like behavior of the GAF Q domain suggests that this C-terminal structure may perform stable conformational switches. Such a self-perpetuating change in the conformation could assist GAF executing its diverse epigenetic functions of gene control in Drosophila.

Indexed as

PeptidesAmino Acid SequenceAnimalsDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEpigenesis, GeneticMolecular Sequence DataPhenotypePrionsProtein Structure, TertiaryTranscription FactorsDNA-Binding ProteinsDrosophila ProteinsPeptidespolyglutaminePrionsTranscription FactorsTrl protein, Drosophila

Identifiers

PMID23731888
PMCPMC3701498
OpenAlexW1992979936

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.