Evidence map›Paper›PMID 23728813›Full record

ArticleApplied and environmental microbiology2013

Biotransformation of Trichoderma spp. and their tolerance to aromatic amines, a major class of pollutants.

Angélique Cocaign, Linh-Chi Bui, Philippe Silar, Laetitia Chan Ho Tong, Florent Busi, Aazdine Lamouri, Christian Mougin, Fernando Rodrigues-Lima, Jean-Marie Dupret, Julien Dairou

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. International journal of molecular sciences · 2022
    Review
  4. Isolation and Characterization of Nickel-TolerantJournal of fungi (Basel, Switzerland) · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Angélique CocaignUniversité Paris Diderot, Sorbonne Paris Cité, Unit of Functional and Adaptive Biology, EAC 4413 CNRS, Paris, France.
Linh-Chi Bui
Philippe Silar
Laetitia Chan Ho Tong
Florent Busi
Aazdine Lamouri
Christian Mougin
Fernando Rodrigues-Lima
Jean-Marie Dupret
Julien Dairou
Unit of Functional and Adaptive Biology · FRSorbonne Paris Cité · FRUniversité Paris Cité · FRCentre National de la Recherche Scientifique · FRÉcologie Fonctionnelle et Écotoxicologie des Agroécosystèmes · FRInterfaces Traitements Organisation et Dynamique des Systèmes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trichoderma spp. are cosmopolitan soil fungi that are highly resistant to many toxic compounds. Here, we show that Trichoderma virens and T. reesei are tolerant to aromatic amines (AA), a major class of pollutants including the highly toxic pesticide residue 3,4-dichloroaniline (3,4-DCA). In a previous study, we provided proof-of-concept remediation experiments in which another soil fungus, Podospora anserina, detoxifies 3,4-DCA through its arylamine N-acetyltransferase (NAT), a xenobiotic-metabolizing enzyme that enables acetyl coenzyme A-dependent detoxification of AA. To assess whether the N-acetylation pathway enables AA tolerance in Trichoderma spp., we cloned and characterized NATs from T. virens and T. reesei. We characterized recombinant enzymes by determining their catalytic efficiencies toward several toxic AA. Through a complementary approach, we also demonstrate that both Trichoderma species efficiently metabolize 3,4-DCA. Finally, we provide evidence that NAT-independent transformation is solely (in T. virens) or mainly (in T. reesei) responsible for the observed removal of 3,4-DCA. We conclude that T. virens and, to a lesser extent, T. reesei likely utilize another, unidentified, metabolic pathway for the detoxification of AA aside from acetylation. This is the first molecular and functional characterization of AA biotransformation in Trichoderma spp. Given the potential of Trichoderma for cleanup of contaminated soils, these results reveal new possibilities in the fungal remediation of AA-contaminated soil.

Indexed as

Soil MicrobiologyAminesAmino Acid SequenceArylamine N-AcetyltransferaseBiotransformationChromatography, High Pressure LiquidCloning, MolecularFungal ProteinsMolecular Sequence DataPhylogenyPolymerase Chain ReactionRecombinant ProteinsSequence AlignmentSoil PollutantsSpecies SpecificityTrichodermaAminesArylamine N-AcetyltransferaseFungal ProteinsRecombinant ProteinsSoil Pollutants

Identifiers

PMID23728813
PMCPMC3719500
OpenAlexW2135640289

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.