Evidence map›Paper›PMID 23728794›Full record

ArticleMolecular biology and evolution2013

APE-type non-LTR retrotransposons of multicellular organisms encode virus-like 2A oligopeptide sequences, which mediate translational recoding during protein synthesis.

Valerie Odon, Garry A Luke, Claire Roulston, Pablo de Felipe, Lin Ruan, Helena Escuin-Ordinas, Jeremy D Brown, Martin D Ryan, Andriy Sukhodub

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Molecular architecture and diversity of StopGo/2A translational recoding.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Valerie OdonBiomedical Sciences Research Complex, Biomolecular Sciences Building, University of St Andrews, Fife, United Kingdom.
Garry A Luke
Claire Roulston
Pablo de Felipe
Lin Ruan
Helena Escuin-Ordinas
Jeremy D Brown
Martin D Ryan
Andriy Sukhodub
University of St Andrews · GBNewcastle University · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E009093/1Biotechnology and Biological Sciences Research Council BB/E010709/1Biotechnology and Biological Sciences Research Council BB/H007849/1Biotechnology and Biological Sciences Research Council C20035Medical Research Council G0901002
6 · The paper itself

Abstract

2A oligopeptide sequences ("2As") mediate a cotranslational recoding event termed "ribosome skipping." Previously we demonstrated the activity of 2As (and "2A-like sequences") within a wide range of animal RNA virus genomes and non-long terminal repeat retrotransposons (non-LTRs) in the genomes of the unicellular organisms Trypanosoma brucei (Ingi) and T. cruzi (L1Tc). Here, we report the presence of 2A-like sequences in the genomes of a wide range of multicellular organisms and, as in the trypanosome genomes, within non-LTR retrotransposons (non-LTRs)-clustering in the Rex1, Crack, L2, L2A, and CR1 clades, in addition to Ingi. These 2A-like sequences were tested for translational recoding activity, and highly active sequences were found within the Rex1, L2, CR1, and Ingi clades. The presence of 2A-like sequences within non-LTRs may not only represent a method of controlling protein biogenesis but also shows some correlation with such apurinic/apyrimidinic DNA endonuclease-type non-LTRs encoding one, rather than two, open reading frames (ORFs). Interestingly, such non-LTRs cluster with closely related elements lacking 2A-like recoding elements but retaining ORF1. Taken together, these observations suggest that acquisition of 2A-like translational recoding sequences may have played a role in the evolution of these elements.

Indexed as

Amino Acid SequenceGenome, ProtozoanMolecular Sequence DataOligopeptidesOpen Reading FramesPhylogenyProtein BiosynthesisRetroelementsSequence AlignmentTrypanosomaOligopeptidesRetroelements2A-like sequencesAPE-type non-LTRretrotransposontranslational recoding

Identifiers

PMID23728794
PMCPMC3708506
OpenAlexW2130076935

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.