Evidence map›Paper›PMID 23728748›Full record

ArticleCurrent microbiology2013

Molecular Characterization of an Atypical IncX3 Plasmid pKPC-NY79 Carrying bla KPC-2 in a Klebsiella pneumoniae.

Pak-Leung Ho, Yuk-Yam Cheung, Wai-U Lo, Zhen Li, Kin-Hung Chow, Chi-Ho Lin, Jasper Fuk-Woo Chan, Vincent Chi-Chung Cheng

Abstract read
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In one paragraph

Article in Current microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

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  12. Carbapenemases: TransformingBiomolecules · 2020
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  13. Spreading Patterns of NDM-ProducingAntimicrobial agents and chemotherapy · 2019
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  18. Circulation ofAntimicrobial agents and chemotherapy · 2017
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  20. Insights into a NovelFrontiers in microbiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Pak-Leung HoDepartment of Microbiology, Queen Mary Hospital and Carol Yu Centre for Infection, The University of Hong Kong, China. plho@hkucc.hku.hk
Yuk-Yam Cheung
Wai-U Lo
Zhen Li
Kin-Hung Chow
Chi-Ho Lin
Jasper Fuk-Woo Chan
Vincent Chi-Chung Cheng
University of Hong Kong · HKQueen Mary Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The IncX family of plasmids has recently been expanded to include at least four subtypes, IncX1-IncX4. The revised classification provides an opportunity for improving our understanding of the sequence diversity of the IncX plasmids and the resistance genes they carried. We described the complete nucleotide sequence of a novel IncX3 plasmid, pKPC-NY79 (42,447 bp) from a sequence-type 258 Klebsiella pneumoniae strain that was isolated from a patient who was hospitalized in New York, United States. In pKPC-NY79, the plasmid scaffold and genetic load region were highly similar to homologous regions in pIncX-SHV (IncX3, JN247852) and the bla KPC carrying pKpQIL (IncFIIk, GU595196), respectively, indicating that it has possibly arisen through recombination of plasmids. The bla KPC-2 gene, as part of a transposon Tn4401a, was found within the genetic load region. The backbone of pKPC-NY79 differs from pIncX-SHV by a deletion involving the gene tandem hns-topB (encoding H-NS protein and topoisomerase III, respectively) and a putative ATPase gene. Unexpectedly, the impact of the hns-topB deletion on host fitness and plasmid stability was found to be small. In conclusion, the findings contribute to a better understanding of the plasmid platforms carrying bla KPC and of variations in the backbone of the IncX3 plasmids.

Indexed as

AgedAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesDNA Transposable ElementsHumansKlebsiella InfectionsKlebsiella pneumoniaeMalePlasmidsUrineAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesDNA Transposable Elements

Identifiers

PMID23728748
OpenAlexW2032316072

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.