Evidence map›Paper›PMID 23728293›Full record

ArticleNature structural & molecular biology2013

A ternary AppA-PpsR-DNA complex mediates light regulation of photosynthesis-related gene expression.

Andreas Winkler, Udo Heintz, Robert Lindner, Jochen Reinstein, Robert L Shoeman, Ilme Schlichting

Open access · greenAbstract readComparative StudyVideo-Audio Media
In one paragraph

Article in Nature structural & molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
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  5. The blue light-dependent LOV-protein LdaP ofFrontiers in microbiology · 2024
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  7. The structural effect between the output module and chromophore-binding domain is a two-way street via the hairpin extension.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
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  13. Towards the Idea of Molecular Brains.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Andreas WinklerDepartment of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Heidelberg, Germany. andreas.winkler@mpimf-heidelberg.mpg.de
Udo Heintz
Robert Lindner
Jochen Reinstein
Robert L Shoeman
Ilme Schlichting
Max Planck Institute for Medical Research · DEMax Planck Society · DE

Funding

Austrian Science Fund FWF J 3242
6 · The paper itself

Abstract

The anoxygenic phototrophic bacterium Rhodobacter sphaeroides uses different energy sources, depending on environmental conditions including aerobic respiration or, in the absence of oxygen, photosynthesis. Photosynthetic genes are repressed at high oxygen tension, but at intermediate levels their partial expression prepares the bacterium for using light energy. Illumination, however, enhances repression under semiaerobic conditions. Here, we describe molecular details of two proteins mediating oxygen and light control of photosynthesis-gene expression: the light-sensing antirepressor AppA and the transcriptional repressor PpsR. Our crystal structures of both proteins and their complex and hydrogen/deuterium-exchange data show that light activation of AppA-PpsR2 affects the PpsR effector region within the complex. DNA binding studies demonstrate the formation of a light-sensitive ternary AppA-PpsR-DNA complex. We discuss implications of these results for regulation by light and oxygen, highlighting new insights into blue light-mediated signal transduction.

Indexed as

Molecular Docking SimulationAmino Acid SequenceBacterial ProteinsChromatography, GelConserved SequenceDNA, BacterialFlavoproteinsGene Expression Regulation, BacterialKineticsModels, BiologicalModels, MolecularMolecular Sequence DataOxygenPhotosynthesisPhotosynthetic Reaction Center Complex ProteinsProtein BindingAppA protein, Rhodobacter sphaeroidesBacterial ProteinsDNA, BacterialFlavoproteinsOxygenPhotosynthetic Reaction Center Complex Proteins

Identifiers

PMID23728293
PMCPMC3702404
OpenAlexW2031968879

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.